Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3346

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
4,001,523	-		Psyr_3345	0.56	+2.7
4,001,539	-		Psyr_3345	0.56	-2.6
4,001,539	-		Psyr_3345	0.56	-1.2
4,001,571	-		Psyr_3345	0.58	+1.3
4,001,616	+		Psyr_3345	0.60	+0.6
4,001,616	+		Psyr_3345	0.60	+2.9
4,001,617	-		Psyr_3345	0.60	-2.3
4,001,682	+		Psyr_3345	0.63	+2.9
4,001,682	+		Psyr_3345	0.63	-3.5
4,001,682	+		Psyr_3345	0.63	-1.3
4,001,683	-		Psyr_3345	0.63	+0.7
4,001,747	+		Psyr_3345	0.66	+0.1
4,001,747	+		Psyr_3345	0.66	-1.1
4,001,747	+		Psyr_3345	0.66	+3.7
4,001,747	+		Psyr_3345	0.66	-0.4
4,001,747	+		Psyr_3345	0.66	-2.1
4,001,747	+		Psyr_3345	0.66	+1.0
4,001,748	-		Psyr_3345	0.66	+0.3
4,001,749	+		Psyr_3345	0.66	+1.7
4,001,749	+		Psyr_3345	0.66	-1.0
4,001,749	+		Psyr_3345	0.66	-0.3
4,001,749	+		Psyr_3345	0.66	+0.5
4,001,749	+		Psyr_3345	0.66	-2.8
4,001,749	+		Psyr_3345	0.66	+2.7
4,001,749	+		Psyr_3345	0.66	+2.3
4,001,749	+		Psyr_3345	0.66	-1.6
4,001,750	-		Psyr_3345	0.66	-4.1
4,001,750	-		Psyr_3345	0.66	-4.3
4,001,750	-		Psyr_3345	0.66	-2.8
4,001,750	-		Psyr_3345	0.66	-0.3
4,001,750	-		Psyr_3345	0.66	+2.9
4,001,774	-		Psyr_3345	0.67	-3.5
4,001,774	-		Psyr_3345	0.67	-1.6
4,001,802	+		Psyr_3345	0.69	+2.3
4,001,802	+		Psyr_3345	0.69	-2.1
4,001,803	-		Psyr_3345	0.69	+1.3
4,001,811	+		Psyr_3345	0.69	+2.6
4,001,811	+		Psyr_3345	0.69	+2.1
4,001,811	+		Psyr_3345	0.69	-1.1
4,001,812	-		Psyr_3345	0.69	+1.7
4,001,812	-		Psyr_3345	0.69	-3.5
4,001,812	-		Psyr_3345	0.69	+1.7
4,001,887	-		Psyr_3345	0.73	+3.1
4,001,904	+		Psyr_3345	0.74	+3.2
4,001,904	+		Psyr_3345	0.74	+1.7
4,001,905	-		Psyr_3345	0.74	+2.1
4,001,905	-		Psyr_3345	0.74	-0.8
4,001,950	+		Psyr_3345	0.76	-1.4
4,001,950	+		Psyr_3345	0.76	-0.8
4,001,951	-		Psyr_3345	0.76	-2.4
4,001,951	-		Psyr_3345	0.76	+0.7
4,001,951	-		Psyr_3345	0.76	-4.6
4,001,951	-		Psyr_3345	0.76	-1.9
4,001,951	-		Psyr_3345	0.76	+2.3
4,001,951	-		Psyr_3345	0.76	+1.7
4,002,078	+		Psyr_3345	0.82	+0.4
4,002,078	+		Psyr_3345	0.82	-0.3
4,002,078	+		Psyr_3345	0.82	-0.1
4,002,078	+		Psyr_3345	0.82	+2.1
4,002,078	+		Psyr_3345	0.82	-1.7
4,002,078	+		Psyr_3345	0.82	-1.1
4,002,078	+		Psyr_3345	0.82	-1.8
4,002,079	-		Psyr_3345	0.82	+1.3
4,002,079	-		Psyr_3345	0.82	+2.1
4,002,079	-		Psyr_3345	0.82	-2.4
4,002,079	-		Psyr_3345	0.82	+0.3
4,002,079	-		Psyr_3345	0.82	+0.6
4,002,079	-		Psyr_3345	0.82	-2.4
4,002,079	-		Psyr_3345	0.82	-2.0
4,002,079	-		Psyr_3345	0.82	-2.0
4,002,079	-		Psyr_3345	0.82	+3.1
4,002,084	+		Psyr_3345	0.82	-1.5
4,002,084	+		Psyr_3345	0.82	+4.7
4,002,084	+		Psyr_3345	0.82	+1.3
4,002,084	+		Psyr_3345	0.82	+1.0
4,002,084	+		Psyr_3345	0.82	-0.3
4,002,084	+		Psyr_3345	0.82	-3.8
4,002,084	+		Psyr_3345	0.82	-1.3
4,002,084	+		Psyr_3345	0.82	+1.7
4,002,085	-		Psyr_3345	0.82	-1.8
4,002,085	-		Psyr_3345	0.82	+0.7
4,002,085	-		Psyr_3345	0.82	+1.7
4,002,085	-		Psyr_3345	0.82	+1.7
4,002,085	-		Psyr_3345	0.82	+2.9
4,002,092	+		Psyr_3345	0.82	+0.2
4,002,092	+		Psyr_3345	0.82	-1.3
4,002,152	+		Psyr_3345	0.85	+1.5
4,002,165	+		Psyr_3345	0.86	+3.3
4,002,165	+		Psyr_3345	0.86	-2.1
4,002,231	+		Psyr_3345	0.89	-0.7
4,002,232	-		Psyr_3345	0.89	+1.7
4,002,232	-		Psyr_3345	0.89	+2.7
4,002,270	+				-0.6
4,002,270	+				-3.6
4,002,270	+				-0.5
4,002,270	+				+4.2
4,002,270	+				+0.1
4,002,270	+				+2.6
4,002,270	+				+2.1
4,002,270	+				+4.4
4,002,271	-				-2.9
4,002,271	-				-2.4
4,002,271	-				-3.3
4,002,282	+				-2.7
4,002,282	+				+0.4
4,002,282	+				+3.9
4,002,282	+				-0.3
4,002,283	-				-1.7
4,002,331	-				+2.6
4,002,332	+				+0.7
4,002,332	+				+0.2
4,002,332	+				+2.7
4,002,332	+				-1.3
4,002,333	-				+0.7
4,002,333	-				-1.4
4,002,378	+				-1.2
4,002,378	+				-2.4
4,002,379	-				+1.7
4,002,462	+				-1.1
4,002,462	+				+2.9
4,002,463	-				-0.3
4,002,463	-				+0.7
4,002,463	-				+1.7
4,002,573	-				-0.9
4,002,825	+		Psyr_3346	0.58	+2.1
4,002,826	-		Psyr_3346	0.58	+1.8
4,002,826	-		Psyr_3346	0.58	-1.0
4,002,886	+		Psyr_3346	0.70	+4.0
4,002,887	-		Psyr_3346	0.70	+1.3
4,002,887	-		Psyr_3346	0.70	-0.3
4,002,887	-		Psyr_3346	0.70	+0.1
4,002,901	-		Psyr_3346	0.72	+2.6
4,002,920	-		Psyr_3346	0.76	+2.3
4,003,044	+				+2.6
4,003,044	+				+0.9
4,003,044	+				-1.6
4,003,045	-				+3.1
4,003,045	-				+3.7
4,003,045	-				+2.1
4,003,111	+				-1.3
4,003,111	+				-2.1
4,003,112	-				-1.6
4,003,112	-				-1.8
4,003,112	-				+1.3
4,003,112	-				+3.2
4,003,112	-				-0.8
4,003,112	-				+3.7
4,003,112	-				-0.2
4,003,112	-				-0.6
4,003,112	-				+3.7
4,003,112	-				+0.2
4,003,115	+				-4.0
4,003,116	-				-5.3
4,003,116	-				+3.4
4,003,116	-				+3.1
4,003,116	-				-2.3
4,003,133	-				+3.7
4,003,225	-				-2.6
4,003,361	+		Psyr_3347	0.21	+0.7
4,003,361	+		Psyr_3347	0.21	+2.1
4,003,361	+		Psyr_3347	0.21	-4.0
4,003,361	+		Psyr_3347	0.21	-2.0
4,003,361	+		Psyr_3347	0.21	-2.0
4,003,361	+		Psyr_3347	0.21	-1.1
4,003,361	+		Psyr_3347	0.21	-2.3
4,003,361	+		Psyr_3347	0.21	+0.2
4,003,361	+		Psyr_3347	0.21	+0.5
4,003,361	+		Psyr_3347	0.21	-0.3
4,003,361	+		Psyr_3347	0.21	-1.8
4,003,361	+		Psyr_3347	0.21	-1.4
4,003,361	+		Psyr_3347	0.21	-0.3
4,003,362	-		Psyr_3347	0.22	-1.8
4,003,362	-		Psyr_3347	0.22	-1.5
4,003,362	-		Psyr_3347	0.22	+1.3
4,003,362	-		Psyr_3347	0.22	-1.9
4,003,362	-		Psyr_3347	0.22	-1.6
4,003,362	-		Psyr_3347	0.22	-1.1
4,003,362	-		Psyr_3347	0.22	+2.6
4,003,362	-		Psyr_3347	0.22	-1.0
4,003,362	-		Psyr_3347	0.22	-1.8
4,003,362	-		Psyr_3347	0.22	-2.0
4,003,362	-		Psyr_3347	0.22	+2.7
4,003,362	-		Psyr_3347	0.22	+2.3
4,003,362	-		Psyr_3347	0.22	+0.2
4,003,362	-		Psyr_3347	0.22	+2.1
4,003,362	-		Psyr_3347	0.22	+3.1
4,003,363	+		Psyr_3347	0.22	-1.1
4,003,363	+		Psyr_3347	0.22	+2.6
4,003,364	-		Psyr_3347	0.22	-4.8
4,003,364	-		Psyr_3347	0.22	-3.6
4,003,364	-		Psyr_3347	0.22	-0.3
4,003,364	-		Psyr_3347	0.22	-0.3
4,003,364	-		Psyr_3347	0.22	-3.1
4,003,364	-		Psyr_3347	0.22	-0.3
4,003,364	-		Psyr_3347	0.22	+2.1
4,003,364	-		Psyr_3347	0.22	+2.6
4,003,364	-		Psyr_3347	0.22	-2.3
4,003,364	-		Psyr_3347	0.22	-0.3
4,003,364	-		Psyr_3347	0.22	+2.6
4,003,367	+		Psyr_3347	0.22	+2.9
4,003,367	+		Psyr_3347	0.22	+2.7
4,003,367	+		Psyr_3347	0.22	-0.6
4,003,367	+		Psyr_3347	0.22	+2.6
4,003,368	-		Psyr_3347	0.22	+0.3
4,003,368	-		Psyr_3347	0.22	+2.7
4,003,368	-		Psyr_3347	0.22	-0.3
4,003,368	-		Psyr_3347	0.22	+2.7
4,003,368	-		Psyr_3347	0.22	+2.3
4,003,368	-		Psyr_3347	0.22	+2.9
4,003,368	-		Psyr_3347	0.22	+2.1
4,003,368	-		Psyr_3347	0.22	-0.3
4,003,525	+		Psyr_3347	0.48	+2.3
4,003,525	+		Psyr_3347	0.48	-1.6
4,003,553	+		Psyr_3347	0.52	+0.9
4,003,605	-		Psyr_3347	0.61	-2.2
4,003,605	-		Psyr_3347	0.61	-1.4
4,003,639	+		Psyr_3347	0.66	-0.3
4,003,640	-		Psyr_3347	0.67	-3.2
4,003,640	-		Psyr_3347	0.67	+0.7
4,003,640	-		Psyr_3347	0.67	+1.3
4,003,886	-				+2.1
4,003,886	-				+0.7
4,003,959	-				-0.6
4,003,974	+				-0.4
4,003,974	+				-0.6
4,003,974	+				+2.3
4,003,975	-				+0.7
4,003,975	-				-1.0
4,003,975	-				+1.3
4,003,975	-				-1.4