Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3307 and Psyr_3308 overlap by 10 nucleotides Psyr_3308 and Psyr_3309 overlap by 1 nucleotides
Psyr_3307: Psyr_3307 - Glycosyl transferase, group 1, at 3,958,098 to 3,959,315
_3307
Psyr_3308: Psyr_3308 - Glycosyl transferase, group 1, at 3,959,306 to 3,960,406
_3308
Psyr_3309: Psyr_3309 - membrane protein, putative, at 3,960,406 to 3,961,821
_3309
Position (kb)
3959
3960
3961 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 3958.317 kb on - strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.542 kb on + strand, within Psyr_3307 at 3958.542 kb on + strand, within Psyr_3307 at 3958.581 kb on + strand, within Psyr_3307 at 3958.582 kb on - strand, within Psyr_3307 at 3958.669 kb on + strand, within Psyr_3307 at 3958.670 kb on - strand, within Psyr_3307 at 3958.701 kb on + strand, within Psyr_3307 at 3958.701 kb on + strand, within Psyr_3307 at 3958.701 kb on + strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.728 kb on + strand, within Psyr_3307 at 3958.729 kb on - strand, within Psyr_3307 at 3958.729 kb on - strand, within Psyr_3307 at 3958.732 kb on - strand, within Psyr_3307 at 3958.732 kb on - strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.791 kb on + strand, within Psyr_3307 at 3958.867 kb on + strand, within Psyr_3307 at 3958.867 kb on + strand, within Psyr_3307 at 3958.867 kb on + strand, within Psyr_3307 at 3958.867 kb on + strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3959.115 kb on + strand, within Psyr_3307 at 3959.115 kb on + strand, within Psyr_3307 at 3959.116 kb on - strand, within Psyr_3307 at 3959.116 kb on - strand, within Psyr_3307 at 3959.116 kb on - strand, within Psyr_3307 at 3959.163 kb on + strand, within Psyr_3307 at 3959.164 kb on - strand, within Psyr_3307 at 3959.172 kb on - strand, within Psyr_3307 at 3959.214 kb on + strand at 3959.215 kb on - strand at 3959.215 kb on - strand at 3959.268 kb on + strand at 3959.268 kb on + strand at 3959.268 kb on + strand at 3959.268 kb on + strand at 3959.268 kb on + strand at 3959.269 kb on - strand at 3959.269 kb on - strand at 3959.269 kb on - strand at 3959.269 kb on - strand at 3959.269 kb on - strand at 3959.311 kb on + strand at 3959.312 kb on - strand at 3959.313 kb on + strand at 3959.313 kb on + strand at 3959.313 kb on + strand at 3959.313 kb on + strand at 3959.314 kb on - strand at 3959.576 kb on + strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.587 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.633 kb on + strand, within Psyr_3308 at 3959.634 kb on - strand, within Psyr_3308 at 3959.637 kb on + strand, within Psyr_3308 at 3959.637 kb on + strand, within Psyr_3308 at 3959.637 kb on + strand, within Psyr_3308 at 3959.637 kb on + strand, within Psyr_3308 at 3959.638 kb on - strand, within Psyr_3308 at 3959.638 kb on - strand, within Psyr_3308 at 3959.638 kb on - strand, within Psyr_3308 at 3959.724 kb on - strand, within Psyr_3308 at 3959.803 kb on + strand, within Psyr_3308 at 3959.803 kb on + strand, within Psyr_3308 at 3959.803 kb on + strand, within Psyr_3308 at 3959.803 kb on + strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.838 kb on + strand, within Psyr_3308 at 3960.010 kb on - strand, within Psyr_3308 at 3960.054 kb on + strand, within Psyr_3308 at 3960.446 kb on + strand at 3960.584 kb on - strand, within Psyr_3309 at 3960.652 kb on + strand, within Psyr_3309 at 3960.652 kb on + strand, within Psyr_3309 at 3960.653 kb on - strand, within Psyr_3309 at 3960.653 kb on - strand, within Psyr_3309 at 3960.806 kb on + strand, within Psyr_3309 at 3960.938 kb on - strand, within Psyr_3309 at 3960.991 kb on + strand, within Psyr_3309 at 3961.318 kb on + strand, within Psyr_3309 at 3961.319 kb on - strand, within Psyr_3309 at 3961.394 kb on - strand, within Psyr_3309 at 3961.394 kb on - strand, within Psyr_3309
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 3,958,317 - Psyr_3307 0.18 +1.7 3,958,446 + Psyr_3307 0.29 +0.7 3,958,446 + Psyr_3307 0.29 -0.7 3,958,446 + Psyr_3307 0.29 -3.3 3,958,446 + Psyr_3307 0.29 -0.9 3,958,446 + Psyr_3307 0.29 -0.9 3,958,446 + Psyr_3307 0.29 -0.3 3,958,447 - Psyr_3307 0.29 -1.2 3,958,447 - Psyr_3307 0.29 -2.1 3,958,447 - Psyr_3307 0.29 -0.3 3,958,447 - Psyr_3307 0.29 -0.7 3,958,447 - Psyr_3307 0.29 +2.9 3,958,447 - Psyr_3307 0.29 +2.7 3,958,447 - Psyr_3307 0.29 +3.7 3,958,447 - Psyr_3307 0.29 +3.8 3,958,447 - Psyr_3307 0.29 -0.3 3,958,447 - Psyr_3307 0.29 -0.4 3,958,447 - Psyr_3307 0.29 -1.9 3,958,542 + Psyr_3307 0.36 +4.0 3,958,542 + Psyr_3307 0.36 -0.6 3,958,581 + Psyr_3307 0.40 -2.3 3,958,582 - Psyr_3307 0.40 -1.9 3,958,669 + Psyr_3307 0.47 +0.3 3,958,670 - Psyr_3307 0.47 -2.6 3,958,701 + Psyr_3307 0.50 +2.3 3,958,701 + Psyr_3307 0.50 +2.1 3,958,701 + Psyr_3307 0.50 +1.3 3,958,702 - Psyr_3307 0.50 -0.7 3,958,702 - Psyr_3307 0.50 +2.6 3,958,702 - Psyr_3307 0.50 +4.3 3,958,702 - Psyr_3307 0.50 -4.2 3,958,702 - Psyr_3307 0.50 -1.8 3,958,728 + Psyr_3307 0.52 +3.7 3,958,729 - Psyr_3307 0.52 -1.1 3,958,729 - Psyr_3307 0.52 +1.3 3,958,732 - Psyr_3307 0.52 -0.3 3,958,732 - Psyr_3307 0.52 +3.9 3,958,785 + Psyr_3307 0.56 +0.7 3,958,785 + Psyr_3307 0.56 +2.1 3,958,785 + Psyr_3307 0.56 +1.3 3,958,785 + Psyr_3307 0.56 +3.6 3,958,785 + Psyr_3307 0.56 -0.6 3,958,786 - Psyr_3307 0.56 +2.7 3,958,786 - Psyr_3307 0.56 -0.3 3,958,786 - Psyr_3307 0.56 -3.1 3,958,786 - Psyr_3307 0.56 +2.7 3,958,786 - Psyr_3307 0.56 +3.3 3,958,786 - Psyr_3307 0.56 -0.2 3,958,791 + Psyr_3307 0.57 -3.4 3,958,867 + Psyr_3307 0.63 -3.7 3,958,867 + Psyr_3307 0.63 -0.8 3,958,867 + Psyr_3307 0.63 +2.6 3,958,867 + Psyr_3307 0.63 -0.5 3,958,868 - Psyr_3307 0.63 +2.9 3,958,868 - Psyr_3307 0.63 +1.7 3,958,868 - Psyr_3307 0.63 -1.0 3,958,868 - Psyr_3307 0.63 -3.8 3,958,868 - Psyr_3307 0.63 +2.3 3,958,868 - Psyr_3307 0.63 +1.1 3,959,115 + Psyr_3307 0.83 -2.3 3,959,115 + Psyr_3307 0.83 -1.3 3,959,116 - Psyr_3307 0.84 +0.1 3,959,116 - Psyr_3307 0.84 -0.3 3,959,116 - Psyr_3307 0.84 -0.3 3,959,163 + Psyr_3307 0.87 +3.3 3,959,164 - Psyr_3307 0.88 +1.3 3,959,172 - Psyr_3307 0.88 +2.7 3,959,214 + +0.9 3,959,215 - +2.1 3,959,215 - +2.1 3,959,268 + +4.3 3,959,268 + +2.3 3,959,268 + +1.7 3,959,268 + +1.3 3,959,268 + -2.6 3,959,269 - +1.6 3,959,269 - -5.4 3,959,269 - +3.3 3,959,269 - +2.6 3,959,269 - -1.7 3,959,311 + -1.6 3,959,312 - +2.3 3,959,313 + -0.6 3,959,313 + -1.6 3,959,313 + +0.3 3,959,313 + +0.7 3,959,314 - +3.7 3,959,576 + Psyr_3308 0.25 -1.9 3,959,577 - Psyr_3308 0.25 +0.7 3,959,577 - Psyr_3308 0.25 +1.3 3,959,577 - Psyr_3308 0.25 +2.7 3,959,577 - Psyr_3308 0.25 +1.3 3,959,577 - Psyr_3308 0.25 +0.7 3,959,587 + Psyr_3308 0.26 -1.0 3,959,628 + Psyr_3308 0.29 +3.1 3,959,628 + Psyr_3308 0.29 +0.2 3,959,628 + Psyr_3308 0.29 +2.9 3,959,628 + Psyr_3308 0.29 +2.6 3,959,628 + Psyr_3308 0.29 +2.7 3,959,628 + Psyr_3308 0.29 +0.6 3,959,628 + Psyr_3308 0.29 +1.3 3,959,628 + Psyr_3308 0.29 +1.7 3,959,628 + Psyr_3308 0.29 -0.8 3,959,628 + Psyr_3308 0.29 +3.1 3,959,628 + Psyr_3308 0.29 +2.6 3,959,629 - Psyr_3308 0.29 +2.1 3,959,629 - Psyr_3308 0.29 +1.7 3,959,629 - Psyr_3308 0.29 -0.7 3,959,629 - Psyr_3308 0.29 -1.0 3,959,629 - Psyr_3308 0.29 +1.3 3,959,629 - Psyr_3308 0.29 +3.3 3,959,629 - Psyr_3308 0.29 -0.6 3,959,629 - Psyr_3308 0.29 +1.3 3,959,629 - Psyr_3308 0.29 +1.3 3,959,633 + Psyr_3308 0.30 +3.3 3,959,634 - Psyr_3308 0.30 +2.3 3,959,637 + Psyr_3308 0.30 -2.2 3,959,637 + Psyr_3308 0.30 +0.2 3,959,637 + Psyr_3308 0.30 -0.9 3,959,637 + Psyr_3308 0.30 -0.9 3,959,638 - Psyr_3308 0.30 -1.7 3,959,638 - Psyr_3308 0.30 +0.7 3,959,638 - Psyr_3308 0.30 -0.3 3,959,724 - Psyr_3308 0.38 -0.7 3,959,803 + Psyr_3308 0.45 +1.2 3,959,803 + Psyr_3308 0.45 +2.3 3,959,803 + Psyr_3308 0.45 +3.2 3,959,803 + Psyr_3308 0.45 -0.8 3,959,804 - Psyr_3308 0.45 +1.3 3,959,804 - Psyr_3308 0.45 -0.3 3,959,804 - Psyr_3308 0.45 +2.1 3,959,804 - Psyr_3308 0.45 +2.7 3,959,804 - Psyr_3308 0.45 -2.1 3,959,838 + Psyr_3308 0.48 +0.7 3,960,010 - Psyr_3308 0.64 -1.7 3,960,054 + Psyr_3308 0.68 -0.9 3,960,446 + +1.6 3,960,584 - Psyr_3309 0.13 -0.6 3,960,652 + Psyr_3309 0.17 +2.1 3,960,652 + Psyr_3309 0.17 -4.0 3,960,653 - Psyr_3309 0.17 -3.1 3,960,653 - Psyr_3309 0.17 +0.4 3,960,806 + Psyr_3309 0.28 +1.0 3,960,938 - Psyr_3309 0.38 -0.3 3,960,991 + Psyr_3309 0.41 -0.5 3,961,318 + Psyr_3309 0.64 -2.0 3,961,319 - Psyr_3309 0.64 +2.3 3,961,394 - Psyr_3309 0.70 -1.9 3,961,394 - Psyr_3309 0.70 +1.3
Or see this region's nucleotide sequence