Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3303

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,952,114	+		Psyr_3302	0.61	+3.9
3,952,114	+		Psyr_3302	0.61	+1.7
3,952,115	-		Psyr_3302	0.61	+0.9
3,952,115	-		Psyr_3302	0.61	-0.5
3,952,115	-		Psyr_3302	0.61	-0.9
3,952,156	+		Psyr_3302	0.64	+2.5
3,952,156	+		Psyr_3302	0.64	-0.3
3,952,156	+		Psyr_3302	0.64	+1.7
3,952,156	+		Psyr_3302	0.64	-0.3
3,952,156	+		Psyr_3302	0.64	+2.5
3,952,157	-		Psyr_3302	0.64	-0.4
3,952,157	-		Psyr_3302	0.64	-0.8
3,952,157	-		Psyr_3302	0.64	-0.5
3,952,348	+		Psyr_3302	0.77	+2.1
3,952,348	+		Psyr_3302	0.77	+1.6
3,952,348	+		Psyr_3302	0.77	+4.0
3,952,348	+		Psyr_3302	0.77	+1.7
3,952,349	-		Psyr_3302	0.77	+4.1
3,952,349	-		Psyr_3302	0.77	+0.1
3,952,394	+		Psyr_3302	0.80	-0.5
3,952,394	+		Psyr_3302	0.80	-0.3
3,952,395	-		Psyr_3302	0.80	+3.4
3,952,395	-		Psyr_3302	0.80	-2.9
3,952,607	-				+2.6
3,952,645	+				-1.8
3,952,645	+				+1.3
3,952,646	-				+3.7
3,952,764	+				+3.4
3,952,765	-				+1.2
3,952,768	-				-2.8
3,952,784	+				-0.3
3,952,784	+				-1.9
3,952,784	+				-0.5
3,952,785	-				-0.8
3,952,785	-				+0.3
3,952,785	-				-2.7
3,952,841	+				-0.0
3,952,842	-				-2.0
3,952,842	-				+1.6
3,952,863	+				+0.1
3,953,044	+		Psyr_3303	0.30	+1.7
3,953,045	-		Psyr_3303	0.30	+0.4
3,953,045	-		Psyr_3303	0.30	+0.1
3,953,095	+		Psyr_3303	0.36	-0.4
3,953,095	+		Psyr_3303	0.36	+2.9
3,953,095	+		Psyr_3303	0.36	+3.3
3,953,096	-		Psyr_3303	0.36	-1.0
3,953,096	-		Psyr_3303	0.36	-1.7
3,953,096	-		Psyr_3303	0.36	+2.6
3,953,096	-		Psyr_3303	0.36	+0.2
3,953,096	-		Psyr_3303	0.36	-0.3
3,953,096	-		Psyr_3303	0.36	+2.3
3,953,096	-		Psyr_3303	0.36	-1.1
3,953,096	-		Psyr_3303	0.36	+3.8
3,953,096	-		Psyr_3303	0.36	+0.7
3,953,096	-		Psyr_3303	0.36	+2.6
3,953,096	-		Psyr_3303	0.36	-0.0
3,953,374	+				-4.6
3,953,375	-		Psyr_3303	0.72	-2.6
3,953,375	-		Psyr_3303	0.72	-1.3
3,953,375	-		Psyr_3303	0.72	+0.6
3,953,383	+		Psyr_3303	0.73	+0.8
3,953,383	+		Psyr_3303	0.73	-2.3
3,953,383	+		Psyr_3303	0.73	-1.1
3,953,384	-		Psyr_3303	0.73	+0.6
3,953,384	-		Psyr_3303	0.73	+3.3
3,953,384	-		Psyr_3303	0.73	+2.6
3,953,518	+				+1.7
3,953,519	-				-1.7
3,953,519	-				+2.1
3,953,569	+				-1.0
3,953,570	-				-0.9
3,953,570	-				+1.1
3,953,590	+				-1.6
3,953,590	+				-3.3
3,953,590	+				-0.3
3,953,591	-				+1.3
3,953,737	-				-3.6
3,953,737	-				+2.6
3,953,907	+		Psyr_3304	0.15	-0.5
3,953,907	+		Psyr_3304	0.15	+3.7
3,953,908	-		Psyr_3304	0.15	+2.6
3,953,908	-		Psyr_3304	0.15	-0.3
3,954,186	+		Psyr_3304	0.29	+2.7
3,954,238	-		Psyr_3304	0.32	-3.3
3,954,279	+		Psyr_3304	0.34	+3.9
3,954,279	+		Psyr_3304	0.34	+2.6
3,954,279	+		Psyr_3304	0.34	-0.6
3,954,280	-		Psyr_3304	0.34	+0.7
3,954,300	+		Psyr_3304	0.35	+0.7
3,954,300	+		Psyr_3304	0.35	-0.4
3,954,301	-		Psyr_3304	0.35	-2.2
3,954,301	-		Psyr_3304	0.35	+2.7
3,954,301	-		Psyr_3304	0.35	-3.3
3,954,326	+		Psyr_3304	0.36	-1.1
3,954,326	+		Psyr_3304	0.36	-1.1
3,954,327	-		Psyr_3304	0.36	+1.7
3,954,327	-		Psyr_3304	0.36	-1.6