Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3208

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3207 and Psyr_3208 are separated by 39 nucleotidesPsyr_3208 and Psyr_3209 are separated by 7 nucleotides Psyr_3207: Psyr_3207 - NADH dehydrogenase subunit L, at 3,837,755 to 3,839,608 _3207 Psyr_3208: Psyr_3208 - NADH dehydrogenase subunit M, at 3,839,648 to 3,841,180 _3208 Psyr_3209: Psyr_3209 - NADH dehydrogenase subunit N, at 3,841,188 to 3,842,657 _3209 Position (kb) 3839 3840 3841 3842Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3839.043 kb on - strand, within Psyr_3207at 3839.439 kb on + strandat 3840.315 kb on - strand, within Psyr_3208at 3840.741 kb on - strand, within Psyr_3208at 3840.800 kb on + strand, within Psyr_3208at 3840.801 kb on - strand, within Psyr_3208at 3840.801 kb on - strand, within Psyr_3208at 3840.801 kb on - strand, within Psyr_3208at 3840.983 kb on + strand, within Psyr_3208at 3841.413 kb on + strand, within Psyr_3209at 3841.471 kb on + strand, within Psyr_3209

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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3,839,043 - Psyr_3207 0.69 +2.1
3,839,439 + -2.5
3,840,315 - Psyr_3208 0.44 +3.1
3,840,741 - Psyr_3208 0.71 +0.8
3,840,800 + Psyr_3208 0.75 -4.0
3,840,801 - Psyr_3208 0.75 -0.2
3,840,801 - Psyr_3208 0.75 +2.1
3,840,801 - Psyr_3208 0.75 +0.8
3,840,983 + Psyr_3208 0.87 -1.0
3,841,413 + Psyr_3209 0.15 +0.8
3,841,471 + Psyr_3209 0.19 -0.2

Or see this region's nucleotide sequence