Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3191
Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | KB with Acridine orange 62.5 ug/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,820,734 | + | +1.8 | |||
| 3,820,735 | - | +4.0 | |||
| 3,820,735 | - | +0.8 | |||
| 3,820,841 | - | Psyr_3191 | 0.24 | +3.0 | |
| 3,821,099 | + | Psyr_3191 | 0.65 | +0.3 | |
| 3,821,099 | + | Psyr_3191 | 0.65 | -0.1 | |
| 3,821,099 | + | Psyr_3191 | 0.65 | -1.2 | |
| 3,821,100 | - | Psyr_3191 | 0.65 | -0.2 | |
| 3,821,100 | - | Psyr_3191 | 0.65 | -1.0 | |
| 3,821,139 | + | Psyr_3191 | 0.72 | +1.3 | |
| 3,821,139 | + | Psyr_3191 | 0.72 | +2.3 | |
| 3,821,140 | - | Psyr_3191 | 0.72 | +3.8 | |
| 3,821,294 | + | +1.8 | |||
| 3,821,361 | + | +1.3 | |||
| 3,821,401 | + | +2.8 | |||
| 3,821,401 | + | -0.2 | |||
| 3,821,401 | + | +2.1 | |||
| 3,821,401 | + | +2.3 | |||
| 3,821,401 | + | +2.3 | |||
| 3,821,401 | + | +0.8 |
Or see this region's nucleotide sequence