Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3164

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,792,143	+		Psyr_3163	0.66	+0.1
3,792,143	+		Psyr_3163	0.66	+1.3
3,792,143	+		Psyr_3163	0.66	-1.6
3,792,144	-		Psyr_3163	0.66	-1.2
3,792,144	-		Psyr_3163	0.66	-2.1
3,792,144	-		Psyr_3163	0.66	+0.8
3,792,162	-		Psyr_3163	0.67	+0.8
3,792,203	+		Psyr_3163	0.70	+2.8
3,792,239	+		Psyr_3163	0.72	+3.3
3,792,240	-		Psyr_3163	0.72	-0.2
3,792,255	+		Psyr_3163	0.74	+1.8
3,792,256	-		Psyr_3163	0.74	+0.8
3,792,256	-		Psyr_3163	0.74	+2.1
3,792,256	-		Psyr_3163	0.74	+3.8
3,792,256	-		Psyr_3163	0.74	-1.9
3,792,256	-		Psyr_3163	0.74	+0.1
3,792,329	-		Psyr_3163	0.79	-1.8
3,792,329	-		Psyr_3163	0.79	-0.3
3,792,416	+		Psyr_3163	0.85	-1.7
3,792,416	+		Psyr_3163	0.85	-2.6
3,792,416	+		Psyr_3163	0.85	-1.3
3,792,416	+		Psyr_3163	0.85	-1.2
3,792,417	-		Psyr_3163	0.85	+1.8
3,792,417	-		Psyr_3163	0.85	-0.7
3,792,417	-		Psyr_3163	0.85	+2.3
3,792,417	-		Psyr_3163	0.85	-2.4
3,792,417	-		Psyr_3163	0.85	+2.1
3,792,417	-		Psyr_3163	0.85	-1.0
3,792,417	-		Psyr_3163	0.85	-0.2
3,792,477	+		Psyr_3163	0.89	+1.3
3,792,477	+		Psyr_3163	0.89	-0.7
3,792,477	+		Psyr_3163	0.89	+3.5
3,792,477	+		Psyr_3163	0.89	-3.5
3,792,477	+		Psyr_3163	0.89	-0.8
3,792,477	+		Psyr_3163	0.89	-1.8
3,792,478	-		Psyr_3163	0.89	-0.5
3,792,478	-		Psyr_3163	0.89	+0.0
3,792,479	+		Psyr_3163	0.89	+2.9
3,792,479	+		Psyr_3163	0.89	+2.6
3,792,480	-		Psyr_3163	0.89	+3.5
3,792,480	-		Psyr_3163	0.89	+1.3
3,792,504	-				+3.8
3,792,504	-				-1.8
3,792,504	-				+3.6
3,792,546	-				-2.0
3,792,672	-				-0.4
3,792,672	-				-0.5
3,792,819	+				+2.8
3,792,846	+				+2.9
3,792,847	-				-1.1
3,792,847	-				+2.3
3,793,170	+				-0.2
3,793,170	+				-0.2
3,793,172	+				-3.9
3,793,172	+				-0.2
3,793,172	+				-2.8
3,793,172	+				-4.1
3,793,172	+				-0.2
3,793,173	-				-3.9
3,793,173	-				+2.8
3,793,173	-				-2.7
3,793,173	-				+2.6
3,793,173	-				-0.2
3,793,180	+				-2.5
3,793,180	+				-2.8
3,793,181	-				-1.6
3,793,181	-				+0.8
3,793,181	-				-0.2
3,793,181	-				-4.1
3,793,181	-				+1.3
3,793,184	+				-0.2
3,793,184	+				-2.9
3,793,184	+				-4.8
3,793,184	+				-0.2
3,793,184	+				-0.2
3,793,184	+				+1.3
3,793,184	+				+0.8
3,793,185	-		Psyr_3164	0.10	-2.0
3,793,185	-		Psyr_3164	0.10	-1.6
3,793,185	-		Psyr_3164	0.10	-1.1
3,793,185	-		Psyr_3164	0.10	+2.9
3,793,185	-		Psyr_3164	0.10	+3.2
3,793,185	-		Psyr_3164	0.10	-1.1
3,793,185	-		Psyr_3164	0.10	+2.3
3,793,185	-		Psyr_3164	0.10	-0.8
3,793,208	+		Psyr_3164	0.14	-4.7
3,793,208	+		Psyr_3164	0.14	-0.2
3,793,208	+		Psyr_3164	0.14	+1.3
3,793,208	+		Psyr_3164	0.14	-3.8
3,793,208	+		Psyr_3164	0.14	-4.0
3,793,209	-		Psyr_3164	0.14	+3.1
3,793,209	-		Psyr_3164	0.14	+3.1
3,793,209	-		Psyr_3164	0.14	+1.8
3,793,209	-		Psyr_3164	0.14	-2.9
3,793,209	-		Psyr_3164	0.14	-2.4
3,793,212	+		Psyr_3164	0.14	-2.6
3,793,213	-		Psyr_3164	0.14	+3.8
3,793,213	-		Psyr_3164	0.14	+1.8
3,793,334	-		Psyr_3164	0.32	+3.2
3,793,408	+		Psyr_3164	0.43	-5.0
3,793,408	+		Psyr_3164	0.43	-2.6
3,793,408	+		Psyr_3164	0.43	-3.6
3,793,408	+		Psyr_3164	0.43	-0.2
3,793,408	+		Psyr_3164	0.43	-4.3
3,793,408	+		Psyr_3164	0.43	-0.2
3,793,408	+		Psyr_3164	0.43	-0.2
3,793,408	+		Psyr_3164	0.43	-0.2
3,793,409	-		Psyr_3164	0.43	-1.1
3,793,409	-		Psyr_3164	0.43	+2.9
3,793,409	-		Psyr_3164	0.43	+3.2
3,793,412	+		Psyr_3164	0.44	+1.3
3,793,412	+		Psyr_3164	0.44	-2.6
3,793,412	+		Psyr_3164	0.44	+0.2
3,793,413	-		Psyr_3164	0.44	-2.4
3,793,604	+		Psyr_3164	0.72	-1.1
3,793,604	+		Psyr_3164	0.72	+1.3
3,793,605	-		Psyr_3164	0.73	-2.6
3,793,605	-		Psyr_3164	0.73	+2.1
3,793,709	+		Psyr_3164	0.88	+1.3
3,793,709	+		Psyr_3164	0.88	+1.3
3,793,710	-		Psyr_3164	0.88	-4.1
3,793,713	+		Psyr_3164	0.89	-2.2
3,793,713	+		Psyr_3164	0.89	-1.0
3,793,713	+		Psyr_3164	0.89	+2.6
3,793,713	+		Psyr_3164	0.89	+2.9
3,793,714	-		Psyr_3164	0.89	+0.8
3,793,765	-				-2.2
3,793,772	+				+2.1
3,793,772	+				+1.8
3,793,773	-				-0.2
3,794,100	+				+2.8
3,794,101	-				-2.6
3,794,101	-				+2.6
3,794,102	+				-0.7
3,794,103	-				-0.2
3,794,103	-				+3.7
3,794,103	-				+0.8
3,794,103	-				+1.8
3,794,103	-				+3.3
3,794,103	-				-2.9
3,794,459	-		Psyr_3165	0.35	-1.9
3,794,459	-		Psyr_3165	0.35	-0.9
3,794,461	+		Psyr_3165	0.35	+2.3
3,794,461	+		Psyr_3165	0.35	-1.7
3,794,461	+		Psyr_3165	0.35	-0.6
3,794,461	+		Psyr_3165	0.35	+2.6
3,794,461	+		Psyr_3165	0.35	-1.1
3,794,461	+		Psyr_3165	0.35	+2.9
3,794,461	+		Psyr_3165	0.35	+2.8
3,794,461	+		Psyr_3165	0.35	+1.3
3,794,461	+		Psyr_3165	0.35	-2.0
3,794,462	-		Psyr_3165	0.35	-2.2
3,794,462	-		Psyr_3165	0.35	+3.3
3,794,462	-		Psyr_3165	0.35	-1.8
3,794,462	-		Psyr_3165	0.35	-1.9
3,794,462	-		Psyr_3165	0.35	-1.3
3,794,462	-		Psyr_3165	0.35	+3.2
3,794,644	+		Psyr_3165	0.55	+0.2
3,794,648	+		Psyr_3165	0.56	+3.2
3,794,648	+		Psyr_3165	0.56	-0.5
3,794,649	-		Psyr_3165	0.56	+2.1
3,794,649	-		Psyr_3165	0.56	-1.6
3,794,680	-		Psyr_3165	0.59	-1.7
3,794,710	+		Psyr_3165	0.63	+0.8
3,794,711	-		Psyr_3165	0.63	+1.8
3,794,722	+		Psyr_3165	0.64	-2.3
3,794,722	+		Psyr_3165	0.64	-4.4
3,794,722	+		Psyr_3165	0.64	-1.1
3,794,722	+		Psyr_3165	0.64	-0.5
3,794,722	+		Psyr_3165	0.64	+2.3
3,794,723	-		Psyr_3165	0.64	+0.7
3,794,723	-		Psyr_3165	0.64	+3.2
3,794,723	-		Psyr_3165	0.64	+1.8
3,794,723	-		Psyr_3165	0.64	+0.5
3,794,723	-		Psyr_3165	0.64	+1.3
3,794,723	-		Psyr_3165	0.64	-3.3
3,794,723	-		Psyr_3165	0.64	+2.8