Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3144

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3142 and Psyr_3143 overlap by 4 nucleotidesPsyr_3143 and Psyr_3144 overlap by 26 nucleotidesPsyr_3144 and Psyr_3145 overlap by 4 nucleotidesPsyr_3145 and Psyr_3146 overlap by 4 nucleotides Psyr_3142: Psyr_3142 - general secretion pathway protein N, putative, at 3,769,113 to 3,769,643 _3142 Psyr_3143: Psyr_3143 - general secretion pathway protein M, putative, at 3,769,640 to 3,770,251 _3143 Psyr_3144: Psyr_3144 - Fimbrial assembly, at 3,770,226 to 3,771,320 _3144 Psyr_3145: Psyr_3145 - general secretion pathway protein K, putative, at 3,771,317 to 3,772,051 _3145 Psyr_3146: Psyr_3146 - general secretion pathway protein J, putative, at 3,772,048 to 3,772,680 _3146 Position (kb) 3770 3771 3772Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3769.449 kb on - strand, within Psyr_3142at 3769.629 kb on + strandat 3769.629 kb on + strandat 3769.629 kb on + strandat 3769.630 kb on - strandat 3769.630 kb on - strandat 3769.630 kb on - strandat 3769.630 kb on - strandat 3769.750 kb on + strand, within Psyr_3143at 3769.750 kb on + strand, within Psyr_3143at 3769.750 kb on + strand, within Psyr_3143at 3769.750 kb on + strand, within Psyr_3143at 3769.751 kb on - strand, within Psyr_3143at 3770.176 kb on - strand, within Psyr_3143at 3770.450 kb on + strand, within Psyr_3144at 3770.542 kb on + strand, within Psyr_3144at 3770.542 kb on + strand, within Psyr_3144at 3770.543 kb on - strand, within Psyr_3144at 3770.543 kb on - strand, within Psyr_3144at 3770.543 kb on - strand, within Psyr_3144at 3770.543 kb on - strand, within Psyr_3144at 3770.543 kb on - strand, within Psyr_3144at 3770.874 kb on + strand, within Psyr_3144at 3770.959 kb on + strand, within Psyr_3144at 3770.960 kb on - strand, within Psyr_3144at 3770.960 kb on - strand, within Psyr_3144at 3770.960 kb on - strand, within Psyr_3144at 3771.342 kb on + strandat 3771.389 kb on + strandat 3771.440 kb on + strand, within Psyr_3145at 3771.545 kb on + strand, within Psyr_3145at 3771.551 kb on + strand, within Psyr_3145at 3771.552 kb on - strand, within Psyr_3145at 3771.552 kb on - strand, within Psyr_3145at 3771.552 kb on - strand, within Psyr_3145at 3771.552 kb on - strand, within Psyr_3145at 3771.573 kb on + strand, within Psyr_3145at 3771.573 kb on + strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.574 kb on - strand, within Psyr_3145at 3771.615 kb on - strand, within Psyr_3145at 3771.615 kb on - strand, within Psyr_3145at 3771.719 kb on + strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.720 kb on - strand, within Psyr_3145at 3771.721 kb on + strand, within Psyr_3145at 3771.722 kb on - strand, within Psyr_3145at 3771.800 kb on - strand, within Psyr_3145at 3771.800 kb on - strand, within Psyr_3145at 3771.866 kb on + strand, within Psyr_3145at 3771.867 kb on - strand, within Psyr_3145at 3771.911 kb on - strand, within Psyr_3145at 3772.007 kb on + strandat 3772.008 kb on - strandat 3772.255 kb on + strand, within Psyr_3146at 3772.256 kb on - strand, within Psyr_3146at 3772.256 kb on - strand, within Psyr_3146at 3772.256 kb on - strand, within Psyr_3146

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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3,769,449 - Psyr_3142 0.63 -2.2
3,769,629 + -1.5
3,769,629 + +3.1
3,769,629 + +3.2
3,769,630 - +2.8
3,769,630 - -1.7
3,769,630 - +3.1
3,769,630 - -0.4
3,769,750 + Psyr_3143 0.18 +3.1
3,769,750 + Psyr_3143 0.18 +4.5
3,769,750 + Psyr_3143 0.18 -1.0
3,769,750 + Psyr_3143 0.18 +0.1
3,769,751 - Psyr_3143 0.18 +2.1
3,770,176 - Psyr_3143 0.88 +2.9
3,770,450 + Psyr_3144 0.20 -1.2
3,770,542 + Psyr_3144 0.29 +3.6
3,770,542 + Psyr_3144 0.29 -3.0
3,770,543 - Psyr_3144 0.29 +0.1
3,770,543 - Psyr_3144 0.29 +3.2
3,770,543 - Psyr_3144 0.29 -0.2
3,770,543 - Psyr_3144 0.29 -0.9
3,770,543 - Psyr_3144 0.29 -1.9
3,770,874 + Psyr_3144 0.59 +1.8
3,770,959 + Psyr_3144 0.67 +0.8
3,770,960 - Psyr_3144 0.67 +1.8
3,770,960 - Psyr_3144 0.67 -0.3
3,770,960 - Psyr_3144 0.67 +0.3
3,771,342 + -4.5
3,771,389 + -1.1
3,771,440 + Psyr_3145 0.17 -1.8
3,771,545 + Psyr_3145 0.31 +0.8
3,771,551 + Psyr_3145 0.32 -1.8
3,771,552 - Psyr_3145 0.32 -0.3
3,771,552 - Psyr_3145 0.32 +1.8
3,771,552 - Psyr_3145 0.32 +2.3
3,771,552 - Psyr_3145 0.32 -1.2
3,771,573 + Psyr_3145 0.35 -2.2
3,771,573 + Psyr_3145 0.35 -1.6
3,771,574 - Psyr_3145 0.35 +4.0
3,771,574 - Psyr_3145 0.35 +4.0
3,771,574 - Psyr_3145 0.35 +3.5
3,771,574 - Psyr_3145 0.35 +2.9
3,771,574 - Psyr_3145 0.35 +0.2
3,771,615 - Psyr_3145 0.41 -2.5
3,771,615 - Psyr_3145 0.41 +1.3
3,771,719 + Psyr_3145 0.55 -1.1
3,771,720 - Psyr_3145 0.55 +2.8
3,771,720 - Psyr_3145 0.55 +2.6
3,771,720 - Psyr_3145 0.55 -0.2
3,771,720 - Psyr_3145 0.55 +2.1
3,771,720 - Psyr_3145 0.55 -1.4
3,771,721 + Psyr_3145 0.55 +2.8
3,771,722 - Psyr_3145 0.55 -3.6
3,771,800 - Psyr_3145 0.66 +4.0
3,771,800 - Psyr_3145 0.66 -2.0
3,771,866 + Psyr_3145 0.75 +1.2
3,771,867 - Psyr_3145 0.75 +1.1
3,771,911 - Psyr_3145 0.81 -1.3
3,772,007 + -0.2
3,772,008 - +0.7
3,772,255 + Psyr_3146 0.33 +3.9
3,772,256 - Psyr_3146 0.33 +3.1
3,772,256 - Psyr_3146 0.33 +3.3
3,772,256 - Psyr_3146 0.33 -2.0

Or see this region's nucleotide sequence