Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3111

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,727,296	-		Psyr_3109	0.85	+0.3
3,727,336	-		Psyr_3109	0.88	+2.9
3,727,512	+				+2.6
3,727,512	+				+1.6
3,727,515	+				+0.3
3,727,515	+				+2.6
3,727,516	-				+3.8
3,727,516	-				-0.2
3,727,540	+				-2.0
3,727,540	+				+0.9
3,727,540	+				+2.6
3,727,540	+				+2.6
3,727,540	+				-2.8
3,727,541	-				-0.2
3,727,541	-				+3.5
3,727,561	+				+3.2
3,727,561	+				-2.2
3,727,561	+				-1.1
3,727,561	+				+0.5
3,727,561	+				+2.8
3,727,562	-				+2.9
3,727,562	-				-0.2
3,727,562	-				-1.1
3,727,653	+				+2.3
3,727,654	-				-1.1
3,727,677	-				-2.0
3,727,691	-				+0.3
3,727,693	+				+2.6
3,727,693	+				-0.2
3,727,693	+				+3.8
3,727,693	+				-1.0
3,727,694	-				+2.8
3,727,694	-				+2.3
3,727,694	-				+1.8
3,727,694	-				+3.3
3,727,694	-				+4.1
3,727,714	+				+3.9
3,727,715	-				-0.7
3,727,733	+				+0.2
3,727,734	-				+0.0
3,727,734	-				-1.0
3,727,785	-		Psyr_3110	0.13	+1.2
3,727,886	+		Psyr_3110	0.33	-1.3
3,727,886	+		Psyr_3110	0.33	-2.1
3,728,024	+		Psyr_3110	0.60	+2.1
3,728,025	-		Psyr_3110	0.60	+0.8
3,728,095	+		Psyr_3110	0.73	-1.5
3,728,195	+				-0.1
3,728,317	+				-1.5
3,728,769	+		Psyr_3111	0.58	-0.6
3,728,769	+		Psyr_3111	0.58	-1.4
3,728,770	-		Psyr_3111	0.58	+4.6
3,728,770	-		Psyr_3111	0.58	+3.5
3,728,770	-		Psyr_3111	0.58	+2.6
3,728,836	+		Psyr_3111	0.66	-0.2
3,728,837	-		Psyr_3111	0.66	+3.3
3,728,868	+		Psyr_3111	0.69	+1.8
3,728,868	+		Psyr_3111	0.69	+1.8
3,728,869	-		Psyr_3111	0.69	-0.5
3,728,869	-		Psyr_3111	0.69	+3.1
3,729,113	+				+2.8
3,729,113	+				+0.8
3,729,114	-				+3.1
3,729,114	-				+1.8
3,729,124	+				-1.6
3,729,124	+				-0.5
3,729,124	+				-0.2
3,729,125	-				+0.2
3,729,125	-				-2.7
3,729,125	-				-0.5
3,729,125	-				+0.1
3,729,147	-				+1.8
3,729,221	+				+2.1
3,729,221	+				-0.2
3,729,221	+				+2.8
3,729,221	+				+2.3
3,729,221	+				-2.7
3,729,221	+				+1.8
3,729,222	-				-1.3
3,729,222	-				+2.8
3,729,222	-				-1.0
3,729,222	-				+4.0
3,729,222	-				-2.0
3,729,230	+				+1.8
3,729,433	-		Psyr_3112	0.17	+0.1
3,729,683	-		Psyr_3112	0.39	+0.9
3,729,718	+		Psyr_3112	0.43	-1.5
3,729,718	+		Psyr_3112	0.43	-2.0
3,729,718	+		Psyr_3112	0.43	+4.5
3,729,718	+		Psyr_3112	0.43	-0.1
3,729,718	+		Psyr_3112	0.43	-0.1
3,729,718	+		Psyr_3112	0.43	+1.3
3,729,718	+		Psyr_3112	0.43	-1.5
3,729,718	+		Psyr_3112	0.43	-2.2
3,729,719	-		Psyr_3112	0.43	+0.8
3,729,719	-		Psyr_3112	0.43	+2.9
3,729,719	-		Psyr_3112	0.43	+1.8
3,729,719	-		Psyr_3112	0.43	-0.8
3,729,719	-		Psyr_3112	0.43	+2.8
3,729,719	-		Psyr_3112	0.43	-0.9
3,729,719	-		Psyr_3112	0.43	+2.6
3,729,719	-		Psyr_3112	0.43	-1.9
3,729,777	-		Psyr_3112	0.48	-0.2
3,730,004	+		Psyr_3112	0.69	-1.9
3,730,013	-		Psyr_3112	0.70	-0.9
3,730,043	+		Psyr_3112	0.73	+1.8
3,730,043	+		Psyr_3112	0.73	+2.6
3,730,044	-		Psyr_3112	0.73	+2.3
3,730,048	+		Psyr_3112	0.73	+0.8
3,730,048	+		Psyr_3112	0.73	+0.8
3,730,048	+		Psyr_3112	0.73	-0.4
3,730,048	+		Psyr_3112	0.73	+2.3
3,730,048	+		Psyr_3112	0.73	+2.1
3,730,048	+		Psyr_3112	0.73	-2.8
3,730,048	+		Psyr_3112	0.73	+2.9
3,730,048	+		Psyr_3112	0.73	-1.6
3,730,048	+		Psyr_3112	0.73	+2.6
3,730,048	+		Psyr_3112	0.73	-2.8
3,730,048	+		Psyr_3112	0.73	+2.3
3,730,048	+		Psyr_3112	0.73	-0.3
3,730,049	-		Psyr_3112	0.73	-0.6
3,730,049	-		Psyr_3112	0.73	-2.2
3,730,049	-		Psyr_3112	0.73	+2.6
3,730,049	-		Psyr_3112	0.73	+3.2
3,730,049	-		Psyr_3112	0.73	-0.1
3,730,049	-		Psyr_3112	0.73	-1.0