Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3095

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3094 and Psyr_3095 overlap by 4 nucleotidesPsyr_3095 and Psyr_3096 overlap by 4 nucleotidesPsyr_3096 and Psyr_3097 are separated by 106 nucleotides Psyr_3094: Psyr_3094 - Periplasmic binding protein, at 3,709,635 to 3,710,648 _3094 Psyr_3095: Psyr_3095 - transport system permease protein, at 3,710,645 to 3,711,667 _3095 Psyr_3096: Psyr_3096 - ABC transporter, at 3,711,664 to 3,712,455 _3096 Psyr_3097: Psyr_3097 - Peptidase U32, at 3,712,562 to 3,714,568 _3097 Position (kb) 3710 3711 3712Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3709.861 kb on + strand, within Psyr_3094at 3709.861 kb on + strand, within Psyr_3094at 3709.861 kb on + strand, within Psyr_3094at 3709.861 kb on + strand, within Psyr_3094at 3709.862 kb on - strand, within Psyr_3094at 3710.040 kb on + strand, within Psyr_3094at 3710.040 kb on + strand, within Psyr_3094at 3710.040 kb on + strand, within Psyr_3094at 3710.041 kb on - strand, within Psyr_3094at 3710.041 kb on - strand, within Psyr_3094at 3710.041 kb on - strand, within Psyr_3094at 3710.041 kb on - strand, within Psyr_3094at 3710.041 kb on - strand, within Psyr_3094at 3710.041 kb on - strand, within Psyr_3094at 3710.041 kb on - strand, within Psyr_3094at 3710.041 kb on - strand, within Psyr_3094at 3710.041 kb on - strand, within Psyr_3094at 3710.127 kb on + strand, within Psyr_3094at 3710.127 kb on + strand, within Psyr_3094at 3710.127 kb on + strand, within Psyr_3094at 3710.127 kb on + strand, within Psyr_3094at 3710.127 kb on + strand, within Psyr_3094at 3710.128 kb on - strand, within Psyr_3094at 3710.128 kb on - strand, within Psyr_3094at 3710.321 kb on + strand, within Psyr_3094at 3710.321 kb on + strand, within Psyr_3094at 3710.360 kb on + strand, within Psyr_3094at 3710.361 kb on - strand, within Psyr_3094at 3710.475 kb on + strand, within Psyr_3094at 3710.475 kb on + strand, within Psyr_3094at 3710.476 kb on - strand, within Psyr_3094at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.792 kb on + strand, within Psyr_3095at 3710.793 kb on - strand, within Psyr_3095at 3710.793 kb on - strand, within Psyr_3095at 3710.793 kb on - strand, within Psyr_3095at 3710.807 kb on - strand, within Psyr_3095at 3711.381 kb on + strand, within Psyr_3095at 3711.382 kb on - strand, within Psyr_3095at 3712.524 kb on + strandat 3712.655 kb on + strandat 3712.655 kb on + strandat 3712.655 kb on + strandat 3712.656 kb on - strandat 3712.656 kb on - strandat 3712.656 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
3,709,861 + Psyr_3094 0.22 +1.3
3,709,861 + Psyr_3094 0.22 +2.3
3,709,861 + Psyr_3094 0.22 -0.2
3,709,861 + Psyr_3094 0.22 +1.8
3,709,862 - Psyr_3094 0.22 -1.2
3,710,040 + Psyr_3094 0.40 +0.8
3,710,040 + Psyr_3094 0.40 -2.7
3,710,040 + Psyr_3094 0.40 -2.8
3,710,041 - Psyr_3094 0.40 -0.2
3,710,041 - Psyr_3094 0.40 -0.5
3,710,041 - Psyr_3094 0.40 -0.2
3,710,041 - Psyr_3094 0.40 -0.8
3,710,041 - Psyr_3094 0.40 +1.3
3,710,041 - Psyr_3094 0.40 -0.7
3,710,041 - Psyr_3094 0.40 +2.1
3,710,041 - Psyr_3094 0.40 +1.3
3,710,041 - Psyr_3094 0.40 -1.4
3,710,127 + Psyr_3094 0.49 -0.8
3,710,127 + Psyr_3094 0.49 +3.3
3,710,127 + Psyr_3094 0.49 +2.3
3,710,127 + Psyr_3094 0.49 -1.8
3,710,127 + Psyr_3094 0.49 -1.6
3,710,128 - Psyr_3094 0.49 -0.4
3,710,128 - Psyr_3094 0.49 -0.7
3,710,321 + Psyr_3094 0.68 -2.1
3,710,321 + Psyr_3094 0.68 +1.3
3,710,360 + Psyr_3094 0.71 +2.6
3,710,361 - Psyr_3094 0.72 +2.6
3,710,475 + Psyr_3094 0.83 -0.4
3,710,475 + Psyr_3094 0.83 -2.8
3,710,476 - Psyr_3094 0.83 +3.3
3,710,792 + Psyr_3095 0.14 +2.9
3,710,792 + Psyr_3095 0.14 -1.7
3,710,792 + Psyr_3095 0.14 +0.8
3,710,792 + Psyr_3095 0.14 +2.3
3,710,792 + Psyr_3095 0.14 -1.1
3,710,792 + Psyr_3095 0.14 +3.8
3,710,792 + Psyr_3095 0.14 +3.2
3,710,793 - Psyr_3095 0.14 +1.3
3,710,793 - Psyr_3095 0.14 +0.8
3,710,793 - Psyr_3095 0.14 +2.1
3,710,807 - Psyr_3095 0.16 -1.4
3,711,381 + Psyr_3095 0.72 -1.6
3,711,382 - Psyr_3095 0.72 +0.8
3,712,524 + +1.3
3,712,655 + +0.9
3,712,655 + -4.2
3,712,655 + +2.3
3,712,656 - +2.6
3,712,656 - -2.4
3,712,656 - -1.4

Or see this region's nucleotide sequence