Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3088

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,694,877	+		Psyr_3087	0.57	-1.7
3,694,878	-		Psyr_3087	0.57	+2.9
3,694,925	+		Psyr_3087	0.60	-1.2
3,694,925	+		Psyr_3087	0.60	+2.8
3,694,937	+		Psyr_3087	0.61	-0.2
3,694,937	+		Psyr_3087	0.61	+2.1
3,694,938	-		Psyr_3087	0.61	-0.4
3,695,235	-		Psyr_3087	0.82	+3.6
3,695,235	-		Psyr_3087	0.82	+2.1
3,695,235	-		Psyr_3087	0.82	+3.8
3,695,415	-				-0.4
3,695,415	-				+1.3
3,695,468	-				-1.2
3,695,628	-				+2.1
3,695,766	+				-4.1
3,695,779	+				-3.9
3,695,878	+				+0.8
3,696,021	-		Psyr_3088	0.21	-0.2
3,696,053	+		Psyr_3088	0.24	-3.0
3,696,084	-		Psyr_3088	0.26	+0.8
3,696,097	+		Psyr_3088	0.27	+2.1
3,696,102	+		Psyr_3088	0.28	-1.8
3,696,103	-		Psyr_3088	0.28	-1.8
3,696,151	+		Psyr_3088	0.32	+2.3
3,696,247	+		Psyr_3088	0.40	-2.9
3,696,325	-		Psyr_3088	0.46	-2.4
3,696,329	-		Psyr_3088	0.47	+2.6
3,696,425	+		Psyr_3088	0.55	-2.4
3,696,494	+		Psyr_3088	0.60	-4.4
3,696,495	-		Psyr_3088	0.60	+0.8
3,696,615	+		Psyr_3088	0.70	-0.5
3,696,616	-		Psyr_3088	0.70	-2.0
3,696,616	-		Psyr_3088	0.70	-1.2
3,696,618	+		Psyr_3088	0.71	-0.6
3,696,865	+				-1.7
3,696,966	-				-0.2
3,696,966	-				+1.8
3,697,050	+				-4.0
3,697,054	+				-3.1
3,697,054	+				+2.1
3,697,113	-				+3.8
3,697,114	+				-4.5
3,697,376	-				-1.2
3,697,419	+				-4.7
3,697,419	+				-0.2
3,697,531	-				-1.8
3,697,531	-				-3.4
3,697,531	-				-0.4
3,697,538	-				-1.6
3,697,645	+				-0.2
3,697,680	-				+3.1
3,697,748	+				-0.2
3,697,749	-				-1.4
3,697,824	-				+4.0
3,697,888	-		Psyr_3089	0.11	-1.3