Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3078

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,681,311	+		Psyr_3077	0.66	-0.0
3,681,505	+		Psyr_3077	0.79	-0.3
3,681,584	+		Psyr_3077	0.84	+2.1
3,681,634	-		Psyr_3077	0.88	+1.4
3,681,634	-		Psyr_3077	0.88	+1.8
3,681,635	+		Psyr_3077	0.88	-2.7
3,681,635	+		Psyr_3077	0.88	+2.6
3,681,635	+		Psyr_3077	0.88	+0.2
3,681,635	+		Psyr_3077	0.88	-0.9
3,681,636	-		Psyr_3077	0.88	+4.0
3,681,636	-		Psyr_3077	0.88	+1.4
3,681,636	-		Psyr_3077	0.88	-1.3
3,681,643	+		Psyr_3077	0.88	-1.2
3,681,643	+		Psyr_3077	0.88	-2.1
3,681,665	-		Psyr_3077	0.90	-0.5
3,681,791	+				-3.2
3,681,816	+				-0.8
3,681,817	-				-0.3
3,681,841	-				-0.2
3,681,843	+				-1.0
3,681,843	+				-3.3
3,681,844	-				+1.8
3,681,854	+				+0.2
3,681,869	+				-1.5
3,681,870	-				+2.4
3,681,886	+				-1.6
3,681,937	+				-2.0
3,681,963	+				+1.7
3,681,964	-				+1.4
3,681,964	-				-0.1
3,681,964	-				-0.3
3,681,966	+				-1.9
3,681,966	+				+2.4
3,681,997	+				+4.0
3,681,997	+				+3.0
3,681,998	-				+0.8
3,681,998	-				-0.5
3,681,998	-				-1.7
3,682,011	+				-1.3
3,682,015	+				+1.4
3,682,016	-				-2.2
3,682,016	-				-1.4
3,682,019	+				+0.2
3,682,019	+				-0.9
3,682,020	-				-2.9
3,682,020	-				-3.2
3,682,021	+				+1.8
3,682,022	-				-3.0
3,682,083	+				-0.2
3,682,084	-				-3.1
3,682,086	+				+0.0
3,682,086	+				+0.4
3,682,086	+				-1.8
3,682,181	-				-3.0
3,682,221	+				+0.1
3,682,221	+				-0.2
3,682,230	-				-2.1
3,682,249	+				-0.2
3,682,250	-				+1.8
3,682,250	-				-3.5
3,682,329	+				+2.8
3,682,329	+				-4.2
3,682,329	+				-0.5
3,682,329	+				-0.7
3,682,329	+				-0.1
3,682,330	-				+3.8
3,682,362	+				-1.3
3,682,362	+				+3.1
3,682,363	-				-0.6
3,682,363	-				+1.8
3,682,363	-				-1.3
3,682,363	-				-0.2
3,682,375	+				-2.1
3,682,498	-		Psyr_3078	0.17	+3.5
3,682,498	-		Psyr_3078	0.17	+2.6
3,682,498	-		Psyr_3078	0.17	+1.3
3,682,589	-		Psyr_3078	0.24	+3.6
3,682,813	+		Psyr_3078	0.42	-3.1
3,682,814	-		Psyr_3078	0.43	-1.4
3,683,073	+		Psyr_3078	0.63	-1.2
3,683,073	+		Psyr_3078	0.63	-1.4
3,683,073	+		Psyr_3078	0.63	-1.9
3,683,073	+		Psyr_3078	0.63	-0.5
3,683,073	+		Psyr_3078	0.63	+3.5
3,683,073	+		Psyr_3078	0.63	-2.8
3,683,074	-		Psyr_3078	0.63	-1.8
3,683,074	-		Psyr_3078	0.63	-2.1
3,683,074	-		Psyr_3078	0.63	-2.1
3,683,074	-		Psyr_3078	0.63	-0.9
3,683,140	+		Psyr_3078	0.69	-0.2
3,683,342	+		Psyr_3078	0.85	+3.4
3,683,343	-		Psyr_3078	0.85	-2.3
3,683,346	+		Psyr_3078	0.85	+1.2
3,683,406	+				-0.4
3,683,406	+				-0.3
3,683,406	+				-0.2
3,683,406	+				-1.2
3,683,407	-				-0.2
3,683,407	-				-3.2
3,683,407	-				+2.6
3,683,407	-				+3.7
3,683,407	-				-0.6
3,683,572	+				+0.3
3,683,572	+				-1.7
3,683,572	+				+3.2
3,683,572	+				+0.8
3,683,573	-				-0.4
3,683,573	-				+3.8
3,683,573	-				-3.0
3,684,085	+				+0.1
3,684,085	+				-1.4
3,684,085	+				+2.6
3,684,085	+				+1.8
3,684,086	-				+2.8
3,684,086	-				-3.7
3,684,086	-				-0.7
3,684,086	-				+1.8
3,684,101	-				+3.0
3,684,101	-				-1.0
3,684,123	+				+1.8
3,684,123	+				-2.6
3,684,124	-				+4.1
3,684,124	-				+2.4
3,684,149	-				-2.0
3,684,257	+				-0.8
3,684,518	-		Psyr_3080	0.16	-1.4