Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3048

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,644,860	+		Psyr_3046	0.64	-0.7
3,644,861	-		Psyr_3046	0.64	+3.2
3,644,861	-		Psyr_3046	0.64	-0.5
3,644,861	-		Psyr_3046	0.64	-2.1
3,645,090	-				+2.6
3,645,090	-				+3.9
3,645,105	+				+1.4
3,645,200	+				-0.2
3,645,219	+				+1.4
3,645,219	+				-1.4
3,645,220	-				-1.4
3,645,223	+				+2.1
3,645,224	-				+2.6
3,645,249	+				+0.9
3,645,249	+				+1.6
3,645,252	+				+0.8
3,645,252	+				-0.9
3,645,393	-				+2.6
3,645,393	-				+3.2
3,645,475	-		Psyr_3047	0.24	-0.3
3,645,475	-		Psyr_3047	0.24	+4.4
3,645,475	-		Psyr_3047	0.24	-0.2
3,645,507	+		Psyr_3047	0.31	-0.2
3,645,507	+		Psyr_3047	0.31	+0.8
3,645,507	+		Psyr_3047	0.31	+2.4
3,645,507	+		Psyr_3047	0.31	+2.1
3,645,508	-		Psyr_3047	0.31	+0.2
3,645,508	-		Psyr_3047	0.31	+3.1
3,645,546	+		Psyr_3047	0.39	+2.4
3,645,546	+		Psyr_3047	0.39	-2.4
3,645,546	+		Psyr_3047	0.39	-1.1
3,645,547	-		Psyr_3047	0.40	+2.1
3,645,547	-		Psyr_3047	0.40	+0.8
3,645,547	-		Psyr_3047	0.40	-1.4
3,645,547	-		Psyr_3047	0.40	+1.6
3,645,547	-		Psyr_3047	0.40	+1.6
3,645,547	-		Psyr_3047	0.40	-1.8
3,645,575	+		Psyr_3047	0.46	-0.5
3,645,576	-		Psyr_3047	0.46	-0.5
3,645,576	-		Psyr_3047	0.46	+3.5
3,645,592	+		Psyr_3047	0.50	+0.8
3,645,795	+				+0.2
3,645,795	+				-0.2
3,645,795	+				+1.9
3,645,795	+				+2.8
3,645,795	+				+3.6
3,645,796	-				+2.4
3,645,796	-				+0.4
3,645,796	-				+1.4
3,645,796	-				+1.4
3,645,796	-				+3.2
3,645,796	-				+3.4
3,645,796	-				+2.9
3,645,796	-				+1.5
3,645,817	-				+0.3
3,645,827	+				+1.8
3,646,192	+		Psyr_3048	0.38	+1.8
3,646,193	-		Psyr_3048	0.38	+3.6
3,646,241	+		Psyr_3048	0.43	-1.1
3,646,241	+		Psyr_3048	0.43	+0.8
3,646,242	-		Psyr_3048	0.43	-1.5
3,646,243	+		Psyr_3048	0.43	+2.8
3,646,243	+		Psyr_3048	0.43	-0.8
3,646,243	+		Psyr_3048	0.43	+3.0
3,646,243	+		Psyr_3048	0.43	-4.5
3,646,244	-		Psyr_3048	0.43	+4.8
3,646,244	-		Psyr_3048	0.43	+1.8
3,646,244	-		Psyr_3048	0.43	-0.0
3,646,244	-		Psyr_3048	0.43	+3.0
3,646,244	-		Psyr_3048	0.43	-0.2
3,646,296	+		Psyr_3048	0.49	+3.0
3,646,297	-		Psyr_3048	0.49	+3.0
3,646,297	-		Psyr_3048	0.49	-1.4
3,646,300	+		Psyr_3048	0.49	+1.8
3,646,300	+		Psyr_3048	0.49	-2.5
3,646,776	-				+3.6
3,646,779	+				+1.8
3,646,779	+				-0.2
3,646,800	+				-2.2
3,646,800	+				-1.8
3,646,800	+				-1.5
3,646,801	-				-1.8
3,646,801	-				-0.4
3,646,803	-				+1.8
3,646,832	+				-2.6
3,646,921	-				+2.1
3,647,080	+		Psyr_3049	0.25	+3.0
3,647,080	+		Psyr_3049	0.25	-0.1
3,647,080	+		Psyr_3049	0.25	+1.4
3,647,080	+		Psyr_3049	0.25	+1.4
3,647,080	+		Psyr_3049	0.25	-1.6
3,647,081	-		Psyr_3049	0.25	+1.4
3,647,081	-		Psyr_3049	0.25	+0.8
3,647,081	-		Psyr_3049	0.25	+1.8
3,647,081	-		Psyr_3049	0.25	-2.4
3,647,081	-		Psyr_3049	0.25	-2.4
3,647,104	+		Psyr_3049	0.28	-1.2
3,647,104	+		Psyr_3049	0.28	+2.1
3,647,104	+		Psyr_3049	0.28	+1.4
3,647,104	+		Psyr_3049	0.28	+1.4
3,647,276	+		Psyr_3049	0.48	-3.1
3,647,276	+		Psyr_3049	0.48	-1.2
3,647,276	+		Psyr_3049	0.48	+3.2
3,647,276	+		Psyr_3049	0.48	+1.8
3,647,276	+		Psyr_3049	0.48	-0.2
3,647,276	+		Psyr_3049	0.48	+0.5
3,647,277	-		Psyr_3049	0.48	-2.8
3,647,277	-		Psyr_3049	0.48	+1.4
3,647,277	-		Psyr_3049	0.48	-1.4
3,647,278	+		Psyr_3049	0.48	+0.3
3,647,278	+		Psyr_3049	0.48	-0.5
3,647,279	-		Psyr_3049	0.49	-1.7
3,647,279	-		Psyr_3049	0.49	-1.1
3,647,380	+		Psyr_3049	0.61	+1.8
3,647,381	-		Psyr_3049	0.61	-0.7
3,647,390	+		Psyr_3049	0.62	-0.7
3,647,391	-		Psyr_3049	0.62	+2.8
3,647,391	-		Psyr_3049	0.62	+1.4
3,647,397	-		Psyr_3049	0.63	-0.5
3,647,440	-		Psyr_3049	0.68	+3.7
3,647,444	+		Psyr_3049	0.68	+0.8
3,647,445	-		Psyr_3049	0.68	+0.4
3,647,617	+		Psyr_3049	0.89	-0.9
3,647,617	+		Psyr_3049	0.89	-3.3
3,647,666	+				-0.4
3,647,667	-				+1.8
3,647,667	-				+0.9