Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3008

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,601,651	-				+3.8
3,601,720	+				-1.7
3,601,721	-				+0.3
3,601,721	-				+1.3
3,601,740	+				+0.8
3,601,740	+				-0.5
3,601,740	+				-0.2
3,601,740	+				-0.8
3,601,741	-				-1.0
3,601,741	-				+1.9
3,601,741	-				-0.3
3,601,741	-				+0.4
3,601,741	-				-2.4
3,601,741	-				-1.9
3,601,741	-				-0.9
3,601,741	-				-1.8
3,601,741	-				+1.0
3,601,741	-				-1.9
3,601,741	-				-1.8
3,601,741	-				-0.8
3,601,895	+		Psyr_3006	0.22	-0.5
3,601,895	+		Psyr_3006	0.22	+0.8
3,601,895	+		Psyr_3006	0.22	-1.2
3,601,896	-		Psyr_3006	0.22	+1.2
3,601,896	-		Psyr_3006	0.22	-0.2
3,601,896	-		Psyr_3006	0.22	-1.7
3,602,028	+		Psyr_3006	0.58	+1.0
3,602,028	+		Psyr_3006	0.58	-1.0
3,602,029	-		Psyr_3006	0.58	+2.1
3,602,029	-		Psyr_3006	0.58	-0.7
3,602,079	+		Psyr_3006	0.72	+1.8
3,602,079	+		Psyr_3006	0.72	+3.6
3,602,178	+				+2.6
3,602,178	+				-2.4
3,602,178	+				-0.2
3,602,178	+				-4.2
3,602,178	+				-1.1
3,602,178	+				-1.4
3,602,179	-				-2.9
3,602,179	-				+0.8
3,602,179	-				-1.4
3,602,179	-				+3.2
3,602,265	-		Psyr_3007	0.20	-0.0
3,602,265	-		Psyr_3007	0.20	+3.9
3,602,502	+		Psyr_3007	0.75	+3.2
3,602,702	+		Psyr_3008	0.11	-0.2
3,602,703	-		Psyr_3008	0.11	-4.2
3,602,703	-		Psyr_3008	0.11	-3.6
3,602,820	-		Psyr_3008	0.26	-0.2
3,602,820	-		Psyr_3008	0.26	-0.2
3,602,825	+		Psyr_3008	0.26	-0.2
3,602,834	+		Psyr_3008	0.27	+2.8
3,602,834	+		Psyr_3008	0.27	-3.2
3,602,834	+		Psyr_3008	0.27	-0.2
3,602,835	-		Psyr_3008	0.27	-2.4
3,602,835	-		Psyr_3008	0.27	-0.2
3,602,974	+		Psyr_3008	0.44	-0.2
3,602,974	+		Psyr_3008	0.44	-0.2
3,602,974	+		Psyr_3008	0.44	-0.2
3,602,975	-		Psyr_3008	0.44	+0.8
3,602,984	-		Psyr_3008	0.45	-4.3
3,603,009	+		Psyr_3008	0.48	-3.8
3,603,009	+		Psyr_3008	0.48	-3.2
3,603,010	-		Psyr_3008	0.48	-4.4
3,603,010	-		Psyr_3008	0.48	-1.9
3,603,010	-		Psyr_3008	0.48	-0.7
3,603,262	+		Psyr_3008	0.79	-2.6
3,603,395	-				-5.2
3,603,395	-				-0.2
3,603,395	-				-2.8
3,603,395	-				+2.1
3,603,407	-				-0.2
3,603,513	+				-0.2
3,603,513	+				-1.7
3,603,513	+				+0.8
3,603,514	-				-1.7
3,603,514	-				-1.7
3,603,568	-				-0.4
3,603,599	+				+2.8
3,603,600	-				+2.6
3,603,600	-				-0.7
3,603,600	-				-4.5
3,603,600	-				-2.0
3,603,644	+				+0.8
3,603,644	+				-0.5
3,603,644	+				+0.8
3,603,645	-				-1.1
3,603,645	-				-2.4
3,603,645	-				-2.1
3,603,798	+		Psyr_3009	0.19	+2.9
3,603,798	+		Psyr_3009	0.19	+1.8
3,603,798	+		Psyr_3009	0.19	+0.5
3,603,799	-		Psyr_3009	0.19	+3.1
3,603,799	-		Psyr_3009	0.19	+2.6
3,603,799	-		Psyr_3009	0.19	+3.8
3,603,799	-		Psyr_3009	0.19	+0.1
3,603,799	-		Psyr_3009	0.19	+1.2
3,603,799	-		Psyr_3009	0.19	+2.9
3,603,799	-		Psyr_3009	0.19	-0.2
3,603,829	-		Psyr_3009	0.25	-2.4
3,603,855	+		Psyr_3009	0.29	-2.2
3,603,855	+		Psyr_3009	0.29	+4.4
3,603,856	-		Psyr_3009	0.29	-1.0
3,603,856	-		Psyr_3009	0.29	+2.1
3,603,873	+		Psyr_3009	0.32	-2.1
3,603,873	+		Psyr_3009	0.32	+1.4
3,603,873	+		Psyr_3009	0.32	-1.9
3,603,873	+		Psyr_3009	0.32	+1.8
3,604,152	+		Psyr_3009	0.82	-0.2
3,604,152	+		Psyr_3009	0.82	+2.9
3,604,152	+		Psyr_3009	0.82	-1.8
3,604,152	+		Psyr_3009	0.82	+1.0
3,604,153	-		Psyr_3009	0.82	-2.1
3,604,164	+		Psyr_3009	0.84	+0.2
3,604,165	-		Psyr_3009	0.84	-2.9
3,604,165	-		Psyr_3009	0.84	-1.7
3,604,182	+		Psyr_3009	0.87	+1.8
3,604,183	-		Psyr_3009	0.87	-2.4
3,604,311	+		Psyr_3010	0.11	+2.3
3,604,311	+		Psyr_3010	0.11	+2.3
3,604,311	+		Psyr_3010	0.11	+3.8
3,604,311	+		Psyr_3010	0.11	-3.8
3,604,311	+		Psyr_3010	0.11	-1.4
3,604,312	-		Psyr_3010	0.11	+1.3
3,604,312	-		Psyr_3010	0.11	+1.3
3,604,318	+		Psyr_3010	0.12	-0.7
3,604,318	+		Psyr_3010	0.12	+3.2
3,604,318	+		Psyr_3010	0.12	+0.3
3,604,318	+		Psyr_3010	0.12	-2.6
3,604,318	+		Psyr_3010	0.12	+0.4
3,604,318	+		Psyr_3010	0.12	-1.7
3,604,319	-				-2.9
3,604,319	-		Psyr_3010	0.13	+0.9
3,604,319	-		Psyr_3010	0.13	+0.8
3,604,346	+		Psyr_3010	0.18	-2.8
3,604,346	+		Psyr_3010	0.18	-0.1
3,604,347	-		Psyr_3010	0.18	+2.1