Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2986

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2983 and Psyr_2984 are separated by 14 nucleotidesPsyr_2984 and Psyr_2985 are separated by 24 nucleotidesPsyr_2985 and Psyr_2986 are separated by 0 nucleotidesPsyr_2986 and Psyr_2987 are separated by 51 nucleotidesPsyr_2987 and Psyr_2988 overlap by 8 nucleotides Psyr_2983: Psyr_2983 - conserved domain protein, at 3,575,522 to 3,575,827 _2983 Psyr_2984: Psyr_2984 - conserved hypothetical protein, at 3,575,842 to 3,576,024 _2984 Psyr_2985: Psyr_2985 - DNA-N1-methyladenine dioxygenase, at 3,576,049 to 3,576,735 _2985 Psyr_2986: Psyr_2986 - Glycoside hydrolase, family 15, at 3,576,736 to 3,578,553 _2986 Psyr_2987: Psyr_2987 - Cof protein:HAD-superfamily hydrolase, subfamily IIB, at 3,578,605 to 3,579,414 _2987 Psyr_2988: Psyr_2988 - glucose-6-phosphate 1-dehydrogenase, at 3,579,407 to 3,580,939 _2988 Position (kb) 3576 3577 3578 3579Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 3575.884 kb on + strand, within Psyr_2984at 3575.991 kb on + strand, within Psyr_2984at 3575.991 kb on + strand, within Psyr_2984at 3575.992 kb on - strand, within Psyr_2984at 3575.992 kb on - strand, within Psyr_2984at 3576.025 kb on + strandat 3576.025 kb on + strandat 3576.368 kb on + strand, within Psyr_2985at 3576.368 kb on + strand, within Psyr_2985at 3576.368 kb on + strand, within Psyr_2985at 3576.451 kb on - strand, within Psyr_2985at 3576.451 kb on - strand, within Psyr_2985at 3576.493 kb on + strand, within Psyr_2985at 3576.782 kb on - strandat 3576.782 kb on - strandat 3576.807 kb on + strandat 3576.807 kb on + strandat 3576.807 kb on + strandat 3576.808 kb on - strandat 3576.875 kb on + strandat 3576.876 kb on - strandat 3576.965 kb on + strand, within Psyr_2986at 3576.965 kb on + strand, within Psyr_2986at 3576.965 kb on + strand, within Psyr_2986at 3576.965 kb on + strand, within Psyr_2986at 3576.965 kb on + strand, within Psyr_2986at 3576.966 kb on - strand, within Psyr_2986at 3576.966 kb on - strand, within Psyr_2986at 3576.966 kb on - strand, within Psyr_2986at 3576.966 kb on - strand, within Psyr_2986at 3577.181 kb on + strand, within Psyr_2986at 3577.181 kb on + strand, within Psyr_2986at 3577.181 kb on + strand, within Psyr_2986at 3577.181 kb on + strand, within Psyr_2986at 3577.182 kb on - strand, within Psyr_2986at 3577.182 kb on - strand, within Psyr_2986at 3577.182 kb on - strand, within Psyr_2986at 3577.182 kb on - strand, within Psyr_2986at 3577.384 kb on + strand, within Psyr_2986at 3577.384 kb on + strand, within Psyr_2986at 3577.384 kb on + strand, within Psyr_2986at 3577.385 kb on - strand, within Psyr_2986at 3577.385 kb on - strand, within Psyr_2986at 3577.385 kb on - strand, within Psyr_2986at 3577.610 kb on + strand, within Psyr_2986at 3577.611 kb on - strand, within Psyr_2986at 3577.643 kb on + strandat 3577.643 kb on + strand, within Psyr_2986at 3577.643 kb on + strand, within Psyr_2986at 3577.643 kb on + strand, within Psyr_2986at 3577.644 kb on - strand, within Psyr_2986at 3577.722 kb on - strand, within Psyr_2986at 3577.776 kb on - strand, within Psyr_2986at 3577.851 kb on + strand, within Psyr_2986at 3577.859 kb on + strand, within Psyr_2986at 3577.859 kb on + strand, within Psyr_2986at 3577.859 kb on + strand, within Psyr_2986at 3577.860 kb on - strand, within Psyr_2986at 3577.878 kb on + strand, within Psyr_2986at 3577.878 kb on + strand, within Psyr_2986at 3577.895 kb on - strand, within Psyr_2986at 3577.895 kb on - strand, within Psyr_2986at 3578.531 kb on + strandat 3578.531 kb on + strandat 3578.621 kb on + strandat 3578.621 kb on + strandat 3578.661 kb on + strandat 3578.668 kb on - strandat 3578.801 kb on + strand, within Psyr_2987at 3578.801 kb on + strand, within Psyr_2987at 3578.861 kb on + strand, within Psyr_2987at 3578.865 kb on - strand, within Psyr_2987at 3578.985 kb on - strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.011 kb on + strand, within Psyr_2987at 3579.012 kb on - strand, within Psyr_2987at 3579.012 kb on - strand, within Psyr_2987at 3579.012 kb on - strand, within Psyr_2987at 3579.047 kb on + strand, within Psyr_2987at 3579.397 kb on + strandat 3579.397 kb on + strandat 3579.397 kb on + strandat 3579.398 kb on - strandat 3579.490 kb on - strandat 3579.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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3,575,884 + Psyr_2984 0.23 -2.6
3,575,991 + Psyr_2984 0.81 +0.7
3,575,991 + Psyr_2984 0.81 -0.9
3,575,992 - Psyr_2984 0.82 +2.3
3,575,992 - Psyr_2984 0.82 -0.8
3,576,025 + +2.1
3,576,025 + +0.7
3,576,368 + Psyr_2985 0.46 +3.4
3,576,368 + Psyr_2985 0.46 -0.8
3,576,368 + Psyr_2985 0.46 +3.1
3,576,451 - Psyr_2985 0.59 -0.8
3,576,451 - Psyr_2985 0.59 +2.1
3,576,493 + Psyr_2985 0.65 +2.3
3,576,782 - +4.0
3,576,782 - -1.7
3,576,807 + -3.1
3,576,807 + -3.0
3,576,807 + +2.5
3,576,808 - +1.7
3,576,875 + +2.5
3,576,876 - -1.3
3,576,965 + Psyr_2986 0.13 +2.4
3,576,965 + Psyr_2986 0.13 -0.3
3,576,965 + Psyr_2986 0.13 -0.2
3,576,965 + Psyr_2986 0.13 -1.8
3,576,965 + Psyr_2986 0.13 +2.1
3,576,966 - Psyr_2986 0.13 +2.5
3,576,966 - Psyr_2986 0.13 +1.3
3,576,966 - Psyr_2986 0.13 -0.3
3,576,966 - Psyr_2986 0.13 +0.6
3,577,181 + Psyr_2986 0.24 +2.5
3,577,181 + Psyr_2986 0.24 -0.7
3,577,181 + Psyr_2986 0.24 +0.7
3,577,181 + Psyr_2986 0.24 +2.1
3,577,182 - Psyr_2986 0.25 -1.4
3,577,182 - Psyr_2986 0.25 -0.8
3,577,182 - Psyr_2986 0.25 +2.9
3,577,182 - Psyr_2986 0.25 -0.6
3,577,384 + Psyr_2986 0.36 -3.6
3,577,384 + Psyr_2986 0.36 +3.3
3,577,384 + Psyr_2986 0.36 +1.3
3,577,385 - Psyr_2986 0.36 -2.0
3,577,385 - Psyr_2986 0.36 +3.2
3,577,385 - Psyr_2986 0.36 -1.8
3,577,610 + Psyr_2986 0.48 +3.2
3,577,611 - Psyr_2986 0.48 -0.3
3,577,643 + +1.3
3,577,643 + Psyr_2986 0.50 +1.7
3,577,643 + Psyr_2986 0.50 -2.0
3,577,643 + Psyr_2986 0.50 -2.1
3,577,644 - Psyr_2986 0.50 +2.7
3,577,722 - Psyr_2986 0.54 +3.3
3,577,776 - Psyr_2986 0.57 +1.7
3,577,851 + Psyr_2986 0.61 -0.3
3,577,859 + Psyr_2986 0.62 -2.4
3,577,859 + Psyr_2986 0.62 +1.3
3,577,859 + Psyr_2986 0.62 -3.5
3,577,860 - Psyr_2986 0.62 +0.7
3,577,878 + Psyr_2986 0.63 +1.3
3,577,878 + Psyr_2986 0.63 -4.2
3,577,895 - Psyr_2986 0.64 +0.8
3,577,895 - Psyr_2986 0.64 -1.4
3,578,531 + -0.3
3,578,531 + +3.6
3,578,621 + -5.5
3,578,621 + -0.7
3,578,661 + -0.3
3,578,668 - +2.3
3,578,801 + Psyr_2987 0.24 +0.7
3,578,801 + Psyr_2987 0.24 -2.6
3,578,861 + Psyr_2987 0.32 -1.8
3,578,865 - Psyr_2987 0.32 +0.7
3,578,985 - Psyr_2987 0.47 -0.6
3,579,011 + Psyr_2987 0.50 +2.5
3,579,011 + Psyr_2987 0.50 +3.1
3,579,011 + Psyr_2987 0.50 +0.1
3,579,011 + Psyr_2987 0.50 -0.3
3,579,011 + Psyr_2987 0.50 -0.3
3,579,012 - Psyr_2987 0.50 -0.9
3,579,012 - Psyr_2987 0.50 +4.0
3,579,012 - Psyr_2987 0.50 -0.3
3,579,047 + Psyr_2987 0.55 -3.2
3,579,397 + +1.3
3,579,397 + -2.4
3,579,397 + +0.2
3,579,398 - -2.8
3,579,490 - -2.9
3,579,490 - -0.3

Or see this region's nucleotide sequence