Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2931

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,519,361	+		Psyr_2929	0.88	-2.3
3,519,361	+		Psyr_2929	0.88	-0.7
3,519,362	-		Psyr_2929	0.88	+2.1
3,519,362	-		Psyr_2929	0.88	-0.3
3,519,362	-		Psyr_2929	0.88	-3.1
3,519,387	+				-3.8
3,519,387	+				+1.5
3,519,388	-				+0.7
3,519,388	-				-2.6
3,519,388	-				+2.1
3,519,388	-				-0.9
3,519,519	+				-2.3
3,519,520	-				+2.7
3,519,636	+		Psyr_2930	0.27	+2.1
3,519,637	-		Psyr_2930	0.27	+0.7
3,519,882	+		Psyr_2930	0.85	+3.1
3,519,883	-		Psyr_2930	0.85	+4.9
3,520,158	+				-2.3
3,520,159	-				+2.1
3,520,159	-				+0.1
3,520,162	+				-0.8
3,520,162	+				+0.2
3,520,162	+				+0.6
3,520,162	+				-0.3
3,520,162	+				-2.4
3,520,162	+				+3.7
3,520,162	+				+2.6
3,520,162	+				+3.3
3,520,162	+				+1.3
3,520,162	+				-1.7
3,520,162	+				-0.9
3,520,162	+				-1.1
3,520,163	-				+3.4
3,520,163	-				+2.3
3,520,163	-				+2.3
3,520,163	-				-2.6
3,520,163	-				-0.6
3,520,163	-				-2.3
3,520,163	-				+1.9
3,520,163	-				+2.9
3,520,163	-				+3.1
3,520,163	-				+2.1
3,520,163	-				+3.6
3,520,163	-				+0.7
3,520,163	-				-2.7
3,520,163	-				-1.8
3,520,163	-				+2.3
3,520,163	-				-1.7
3,520,163	-				+0.7
3,520,163	-				-0.9
3,520,163	-				-1.3
3,520,163	-				-1.9
3,520,163	-				-0.9
3,520,163	-				-2.1
3,520,163	-				+3.8
3,520,163	-				-1.2
3,520,163	-				+2.3
3,520,163	-				-1.0
3,520,179	-				-1.4
3,520,198	+				-2.6
3,520,199	-				+0.7
3,520,199	-				+0.7
3,520,397	+		Psyr_2931	0.31	+2.6
3,520,397	+		Psyr_2931	0.31	+3.3
3,520,397	+		Psyr_2931	0.31	+0.0
3,520,397	+		Psyr_2931	0.31	-1.0
3,520,608	-		Psyr_2931	0.56	+2.7
3,520,640	+		Psyr_2931	0.59	+1.7
3,520,640	+		Psyr_2931	0.59	+3.4
3,520,641	-		Psyr_2931	0.59	-0.8
3,520,641	-		Psyr_2931	0.59	+2.3
3,520,641	-		Psyr_2931	0.59	-0.3
3,520,641	-		Psyr_2931	0.59	-1.6
3,520,641	-		Psyr_2931	0.59	+0.1
3,520,642	+		Psyr_2931	0.59	+3.1
3,520,642	+		Psyr_2931	0.59	-0.6
3,520,643	-		Psyr_2931	0.60	+1.7
3,520,643	-		Psyr_2931	0.60	+3.4
3,520,643	-		Psyr_2931	0.60	-0.3
3,520,762	+		Psyr_2931	0.73	+1.3
3,520,762	+		Psyr_2931	0.73	+3.4
3,520,762	+		Psyr_2931	0.73	+2.6
3,520,762	+		Psyr_2931	0.73	+3.1
3,520,762	+		Psyr_2931	0.73	+2.9
3,520,763	-		Psyr_2931	0.73	-1.7
3,520,763	-		Psyr_2931	0.73	-0.3
3,520,763	-		Psyr_2931	0.73	+2.3
3,520,763	-		Psyr_2931	0.73	+3.2
3,520,763	-		Psyr_2931	0.73	+1.7
3,520,942	+				+2.1
3,520,943	-				+2.3
3,520,943	-				-2.3
3,520,943	-				+2.3
3,521,003	+				+2.6
3,521,004	-				+1.3
3,521,009	+				-0.3
3,521,009	+				-1.4
3,521,010	-				-0.3
3,521,068	+		Psyr_2932	0.22	-1.3
3,521,365	-				-0.9
3,521,371	+				-1.0
3,521,373	+				+1.1
3,521,373	+				+2.3
3,521,373	+				+0.7
3,521,374	-				+2.3
3,521,374	-				+3.6
3,521,374	-				-1.1
3,521,374	-				+3.2
3,521,374	-				+2.1
3,521,374	-				-1.8
3,521,374	-				-1.3
3,521,374	-				-0.3
3,521,374	-				-0.3
3,521,374	-				-1.1
3,521,420	-				-0.5
3,521,458	-				-5.3
3,521,558	+		Psyr_2933	0.17	-1.9
3,521,590	+		Psyr_2933	0.23	+0.7
3,521,590	+		Psyr_2933	0.23	+3.6
3,521,590	+		Psyr_2933	0.23	-1.6
3,521,590	+		Psyr_2933	0.23	+0.1
3,521,590	+		Psyr_2933	0.23	+1.3