Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2896 and Psyr_2897 are separated by 2 nucleotides Psyr_2897 and Psyr_2898 are separated by 145 nucleotides Psyr_2898 and Psyr_2899 are separated by 81 nucleotides
Psyr_2896: Psyr_2896 - Excinuclease ABC subunit C, at 3,474,485 to 3,476,308
_2896
Psyr_2897: Psyr_2897 - regulatory protein, LuxR:Response regulator receiver, at 3,476,311 to 3,476,979
_2897
Psyr_2898: Psyr_2898 - Helix-turn-helix motif protein, at 3,477,125 to 3,477,487
_2898
Psyr_2899: Psyr_2899 - conserved hypothetical protein, at 3,477,569 to 3,477,802
_2899
Position (kb)
3476
3477 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 3475.405 kb on - strand, within Psyr_2896 at 3475.448 kb on + strand, within Psyr_2896 at 3475.448 kb on + strand, within Psyr_2896 at 3475.449 kb on - strand, within Psyr_2896 at 3475.449 kb on - strand, within Psyr_2896 at 3475.449 kb on - strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.736 kb on + strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.737 kb on - strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.749 kb on + strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.750 kb on - strand, within Psyr_2896 at 3475.804 kb on - strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.836 kb on + strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.837 kb on - strand, within Psyr_2896 at 3475.927 kb on - strand, within Psyr_2896 at 3475.927 kb on - strand, within Psyr_2896 at 3475.998 kb on + strand, within Psyr_2896 at 3475.998 kb on + strand, within Psyr_2896 at 3475.998 kb on + strand, within Psyr_2896 at 3475.998 kb on + strand, within Psyr_2896 at 3475.999 kb on - strand, within Psyr_2896 at 3475.999 kb on - strand, within Psyr_2896 at 3476.035 kb on - strand, within Psyr_2896 at 3476.172 kb on + strand at 3476.172 kb on + strand at 3476.214 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.242 kb on + strand at 3476.243 kb on - strand at 3476.243 kb on - strand at 3476.243 kb on - strand at 3476.341 kb on + strand at 3476.342 kb on - strand at 3476.342 kb on - strand at 3476.394 kb on + strand, within Psyr_2897 at 3476.405 kb on + strand, within Psyr_2897 at 3476.405 kb on + strand, within Psyr_2897 at 3476.406 kb on - strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.409 kb on + strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.410 kb on - strand, within Psyr_2897 at 3476.585 kb on + strand, within Psyr_2897 at 3476.585 kb on + strand, within Psyr_2897 at 3476.586 kb on - strand, within Psyr_2897 at 3476.654 kb on + strand, within Psyr_2897 at 3476.654 kb on + strand, within Psyr_2897 at 3476.655 kb on - strand, within Psyr_2897 at 3476.941 kb on + strand at 3476.941 kb on + strand at 3476.941 kb on + strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.942 kb on - strand at 3476.949 kb on + strand at 3476.949 kb on + strand at 3476.949 kb on + strand at 3476.950 kb on - strand at 3476.979 kb on + strand at 3477.021 kb on + strand at 3477.021 kb on + strand at 3477.022 kb on - strand at 3477.049 kb on + strand at 3477.050 kb on - strand at 3477.050 kb on - strand at 3477.124 kb on - strand at 3477.124 kb on - strand at 3477.124 kb on - strand at 3477.130 kb on + strand at 3477.234 kb on + strand, within Psyr_2898 at 3477.260 kb on - strand, within Psyr_2898 at 3477.309 kb on + strand, within Psyr_2898 at 3477.309 kb on + strand, within Psyr_2898 at 3477.310 kb on - strand, within Psyr_2898 at 3477.310 kb on - strand, within Psyr_2898 at 3477.310 kb on - strand, within Psyr_2898 at 3477.310 kb on - strand, within Psyr_2898 at 3477.310 kb on - strand, within Psyr_2898 at 3477.310 kb on - strand, within Psyr_2898 at 3477.413 kb on + strand, within Psyr_2898 at 3477.413 kb on + strand, within Psyr_2898 at 3477.414 kb on - strand, within Psyr_2898 at 3477.427 kb on + strand, within Psyr_2898 at 3477.428 kb on - strand, within Psyr_2898 at 3477.428 kb on - strand, within Psyr_2898 at 3477.428 kb on - strand, within Psyr_2898 at 3477.428 kb on - strand, within Psyr_2898 at 3477.495 kb on + strand at 3477.495 kb on + strand at 3477.495 kb on + strand at 3477.495 kb on + strand at 3477.495 kb on + strand at 3477.495 kb on + strand at 3477.496 kb on - strand at 3477.496 kb on - strand at 3477.496 kb on - strand at 3477.496 kb on - strand at 3477.496 kb on - strand at 3477.496 kb on - strand at 3477.518 kb on - strand at 3477.527 kb on + strand at 3477.528 kb on - strand at 3477.568 kb on + strand at 3477.568 kb on + strand at 3477.579 kb on + strand at 3477.579 kb on + strand at 3477.580 kb on - strand at 3477.584 kb on - strand at 3477.584 kb on - strand at 3477.674 kb on + strand, within Psyr_2899 at 3477.674 kb on + strand, within Psyr_2899 at 3477.675 kb on - strand, within Psyr_2899 at 3477.681 kb on + strand, within Psyr_2899 at 3477.722 kb on - strand, within Psyr_2899 at 3477.726 kb on + strand, within Psyr_2899 at 3477.726 kb on + strand, within Psyr_2899 at 3477.726 kb on + strand, within Psyr_2899 at 3477.726 kb on + strand, within Psyr_2899 at 3477.726 kb on + strand, within Psyr_2899 at 3477.727 kb on - strand, within Psyr_2899 at 3477.727 kb on - strand, within Psyr_2899 at 3477.727 kb on - strand, within Psyr_2899 at 3477.727 kb on - strand, within Psyr_2899 at 3477.732 kb on + strand, within Psyr_2899 at 3477.733 kb on - strand, within Psyr_2899 at 3477.808 kb on + strand at 3477.812 kb on - strand at 3477.812 kb on - strand at 3477.880 kb on + strand at 3477.881 kb on - strand at 3477.882 kb on + strand at 3477.882 kb on + strand at 3477.901 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 3,475,405 - Psyr_2896 0.50 +3.8 3,475,448 + Psyr_2896 0.53 +0.8 3,475,448 + Psyr_2896 0.53 +2.1 3,475,449 - Psyr_2896 0.53 +2.3 3,475,449 - Psyr_2896 0.53 -4.6 3,475,449 - Psyr_2896 0.53 +1.8 3,475,736 + Psyr_2896 0.69 -1.3 3,475,736 + Psyr_2896 0.69 +0.8 3,475,736 + Psyr_2896 0.69 -1.4 3,475,736 + Psyr_2896 0.69 +0.8 3,475,736 + Psyr_2896 0.69 -1.8 3,475,736 + Psyr_2896 0.69 +3.2 3,475,736 + Psyr_2896 0.69 -2.2 3,475,736 + Psyr_2896 0.69 +2.8 3,475,736 + Psyr_2896 0.69 +3.6 3,475,737 - Psyr_2896 0.69 +0.3 3,475,737 - Psyr_2896 0.69 +3.1 3,475,737 - Psyr_2896 0.69 -2.9 3,475,737 - Psyr_2896 0.69 +1.3 3,475,737 - Psyr_2896 0.69 +2.6 3,475,737 - Psyr_2896 0.69 +2.6 3,475,749 + Psyr_2896 0.69 +1.8 3,475,749 + Psyr_2896 0.69 -0.9 3,475,749 + Psyr_2896 0.69 +2.8 3,475,749 + Psyr_2896 0.69 +1.8 3,475,749 + Psyr_2896 0.69 -2.0 3,475,750 - Psyr_2896 0.69 +1.3 3,475,750 - Psyr_2896 0.69 -2.1 3,475,750 - Psyr_2896 0.69 -2.8 3,475,750 - Psyr_2896 0.69 +1.0 3,475,750 - Psyr_2896 0.69 -0.5 3,475,804 - Psyr_2896 0.72 -1.0 3,475,836 + Psyr_2896 0.74 +0.1 3,475,836 + Psyr_2896 0.74 +1.8 3,475,836 + Psyr_2896 0.74 -0.4 3,475,836 + Psyr_2896 0.74 -1.1 3,475,836 + Psyr_2896 0.74 +3.9 3,475,837 - Psyr_2896 0.74 +0.1 3,475,837 - Psyr_2896 0.74 -3.5 3,475,837 - Psyr_2896 0.74 -0.1 3,475,837 - Psyr_2896 0.74 +3.7 3,475,837 - Psyr_2896 0.74 +1.8 3,475,927 - Psyr_2896 0.79 -1.1 3,475,927 - Psyr_2896 0.79 -1.8 3,475,998 + Psyr_2896 0.83 -0.2 3,475,998 + Psyr_2896 0.83 +4.0 3,475,998 + Psyr_2896 0.83 -0.8 3,475,998 + Psyr_2896 0.83 +3.5 3,475,999 - Psyr_2896 0.83 -0.7 3,475,999 - Psyr_2896 0.83 -2.1 3,476,035 - Psyr_2896 0.85 +3.2 3,476,172 + -0.2 3,476,172 + +0.8 3,476,214 + +0.5 3,476,242 + +0.7 3,476,242 + -1.5 3,476,242 + -1.7 3,476,242 + -1.2 3,476,242 + -1.5 3,476,242 + +3.8 3,476,242 + +3.8 3,476,243 - -2.2 3,476,243 - -2.8 3,476,243 - -0.2 3,476,341 + -1.7 3,476,342 - -5.5 3,476,342 - -3.7 3,476,394 + Psyr_2897 0.12 -1.2 3,476,405 + Psyr_2897 0.14 -5.3 3,476,405 + Psyr_2897 0.14 +0.0 3,476,406 - Psyr_2897 0.14 -3.4 3,476,409 + Psyr_2897 0.15 +2.8 3,476,409 + Psyr_2897 0.15 -0.9 3,476,409 + Psyr_2897 0.15 -1.5 3,476,409 + Psyr_2897 0.15 +0.2 3,476,409 + Psyr_2897 0.15 -1.2 3,476,409 + Psyr_2897 0.15 -0.1 3,476,410 - Psyr_2897 0.15 -3.2 3,476,410 - Psyr_2897 0.15 -5.5 3,476,410 - Psyr_2897 0.15 -3.1 3,476,410 - Psyr_2897 0.15 -2.1 3,476,410 - Psyr_2897 0.15 -3.2 3,476,410 - Psyr_2897 0.15 +1.8 3,476,410 - Psyr_2897 0.15 +3.8 3,476,410 - Psyr_2897 0.15 -1.1 3,476,585 + Psyr_2897 0.41 -1.2 3,476,585 + Psyr_2897 0.41 -0.9 3,476,586 - Psyr_2897 0.41 -1.7 3,476,654 + Psyr_2897 0.51 -0.7 3,476,654 + Psyr_2897 0.51 +2.8 3,476,655 - Psyr_2897 0.51 -1.7 3,476,941 + -1.8 3,476,941 + -1.6 3,476,941 + +2.9 3,476,942 - +0.8 3,476,942 - -2.7 3,476,942 - +1.8 3,476,942 - -3.1 3,476,942 - +2.3 3,476,942 - -2.7 3,476,942 - -0.8 3,476,942 - -1.2 3,476,949 + -3.9 3,476,949 + -3.3 3,476,949 + +3.8 3,476,950 - -2.4 3,476,979 + +2.8 3,477,021 + -2.6 3,477,021 + -0.9 3,477,022 - +1.3 3,477,049 + +0.5 3,477,050 - +0.1 3,477,050 - +0.8 3,477,124 - -0.2 3,477,124 - +2.9 3,477,124 - +1.8 3,477,130 + +0.2 3,477,234 + Psyr_2898 0.30 +2.9 3,477,260 - Psyr_2898 0.37 -0.9 3,477,309 + Psyr_2898 0.51 -4.6 3,477,309 + Psyr_2898 0.51 -0.2 3,477,310 - Psyr_2898 0.51 -3.2 3,477,310 - Psyr_2898 0.51 +2.8 3,477,310 - Psyr_2898 0.51 -1.7 3,477,310 - Psyr_2898 0.51 +1.3 3,477,310 - Psyr_2898 0.51 -1.7 3,477,310 - Psyr_2898 0.51 +2.6 3,477,413 + Psyr_2898 0.79 +1.8 3,477,413 + Psyr_2898 0.79 -1.2 3,477,414 - Psyr_2898 0.80 +1.3 3,477,427 + Psyr_2898 0.83 -3.4 3,477,428 - Psyr_2898 0.83 -0.6 3,477,428 - Psyr_2898 0.83 +2.6 3,477,428 - Psyr_2898 0.83 +2.6 3,477,428 - Psyr_2898 0.83 +2.1 3,477,495 + +2.8 3,477,495 + +1.8 3,477,495 + -1.7 3,477,495 + +2.8 3,477,495 + -3.2 3,477,495 + -1.2 3,477,496 - +2.1 3,477,496 - -0.9 3,477,496 - -0.5 3,477,496 - -0.4 3,477,496 - +1.8 3,477,496 - -2.1 3,477,518 - +2.3 3,477,527 + +2.9 3,477,528 - -0.9 3,477,568 + +3.7 3,477,568 + -1.5 3,477,579 + -0.2 3,477,579 + +2.1 3,477,580 - -2.2 3,477,584 - -2.1 3,477,584 - -1.7 3,477,674 + Psyr_2899 0.45 +3.1 3,477,674 + Psyr_2899 0.45 +2.3 3,477,675 - Psyr_2899 0.45 +0.1 3,477,681 + Psyr_2899 0.48 -3.1 3,477,722 - Psyr_2899 0.65 +1.8 3,477,726 + Psyr_2899 0.67 -2.7 3,477,726 + Psyr_2899 0.67 -1.1 3,477,726 + Psyr_2899 0.67 -1.1 3,477,726 + Psyr_2899 0.67 +2.3 3,477,726 + Psyr_2899 0.67 -1.0 3,477,727 - Psyr_2899 0.68 +2.1 3,477,727 - Psyr_2899 0.68 -0.2 3,477,727 - Psyr_2899 0.68 -0.2 3,477,727 - Psyr_2899 0.68 +0.8 3,477,732 + Psyr_2899 0.70 +0.3 3,477,733 - Psyr_2899 0.70 +1.8 3,477,808 + +0.8 3,477,812 - +0.8 3,477,812 - +1.8 3,477,880 + -0.2 3,477,881 - -1.0 3,477,882 + -1.2 3,477,882 + -2.4 3,477,901 + +2.3
Or see this region's nucleotide sequence