Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2889

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2888 and Psyr_2889 are separated by 22 nucleotidesPsyr_2889 and Psyr_2890 are separated by 28 nucleotidesPsyr_2890 and Psyr_2891 overlap by 8 nucleotides Psyr_2888: Psyr_2888 - Amine oxidase, at 3,464,642 to 3,466,225 _2888 Psyr_2889: Psyr_2889 - amino acid ABC transporter substrate-binding protein, PAAT family, at 3,466,248 to 3,467,177 _2889 Psyr_2890: Psyr_2890 - amino acid ABC transporter ATP-binding protein, PAAT family, at 3,467,206 to 3,467,991 _2890 Psyr_2891: Psyr_2891 - amino acid ABC transporter membrane protein, PAAT family, at 3,467,984 to 3,468,973 _2891 Position (kb) 3466 3467 3468Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3465.256 kb on - strand, within Psyr_2888at 3465.288 kb on + strand, within Psyr_2888at 3465.288 kb on + strand, within Psyr_2888at 3465.289 kb on - strand, within Psyr_2888at 3465.289 kb on - strand, within Psyr_2888at 3465.300 kb on + strand, within Psyr_2888at 3465.300 kb on + strand, within Psyr_2888at 3465.300 kb on + strand, within Psyr_2888at 3465.301 kb on - strand, within Psyr_2888at 3465.304 kb on + strand, within Psyr_2888at 3465.305 kb on - strand, within Psyr_2888at 3465.305 kb on - strand, within Psyr_2888at 3465.305 kb on - strand, within Psyr_2888at 3465.382 kb on - strand, within Psyr_2888at 3465.606 kb on + strand, within Psyr_2888at 3465.606 kb on + strand, within Psyr_2888at 3465.768 kb on - strand, within Psyr_2888at 3465.797 kb on + strand, within Psyr_2888at 3465.797 kb on + strand, within Psyr_2888at 3465.798 kb on - strand, within Psyr_2888at 3465.882 kb on + strand, within Psyr_2888at 3465.883 kb on - strand, within Psyr_2888at 3465.883 kb on - strand, within Psyr_2888at 3465.883 kb on - strand, within Psyr_2888at 3465.883 kb on - strand, within Psyr_2888at 3465.927 kb on + strand, within Psyr_2888at 3465.927 kb on + strand, within Psyr_2888at 3466.484 kb on - strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.492 kb on - strand, within Psyr_2889at 3466.492 kb on - strand, within Psyr_2889at 3466.492 kb on - strand, within Psyr_2889at 3466.568 kb on - strandat 3466.693 kb on - strand, within Psyr_2889at 3466.723 kb on + strand, within Psyr_2889at 3466.723 kb on + strand, within Psyr_2889at 3466.724 kb on - strand, within Psyr_2889at 3466.724 kb on - strand, within Psyr_2889at 3466.748 kb on - strand, within Psyr_2889at 3467.117 kb on + strandat 3467.117 kb on + strandat 3467.117 kb on + strandat 3467.118 kb on - strandat 3467.118 kb on - strandat 3467.209 kb on + strandat 3467.209 kb on + strandat 3467.210 kb on - strandat 3467.735 kb on + strand, within Psyr_2890at 3467.736 kb on - strand, within Psyr_2890at 3467.769 kb on - strand, within Psyr_2890at 3467.769 kb on - strand, within Psyr_2890at 3467.769 kb on - strand, within Psyr_2890at 3467.864 kb on - strand, within Psyr_2890at 3468.059 kb on + strandat 3468.096 kb on + strand, within Psyr_2891at 3468.096 kb on + strand, within Psyr_2891at 3468.096 kb on + strand, within Psyr_2891at 3468.096 kb on + strand, within Psyr_2891at 3468.097 kb on - strand, within Psyr_2891at 3468.097 kb on - strand, within Psyr_2891at 3468.097 kb on - strand, within Psyr_2891at 3468.121 kb on + strand, within Psyr_2891

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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3,465,256 - Psyr_2888 0.39 -2.2
3,465,288 + Psyr_2888 0.41 -0.8
3,465,288 + Psyr_2888 0.41 -0.3
3,465,289 - Psyr_2888 0.41 +2.3
3,465,289 - Psyr_2888 0.41 +2.1
3,465,300 + Psyr_2888 0.42 +2.1
3,465,300 + Psyr_2888 0.42 +3.8
3,465,300 + Psyr_2888 0.42 +3.7
3,465,301 - Psyr_2888 0.42 +3.1
3,465,304 + Psyr_2888 0.42 -2.4
3,465,305 - Psyr_2888 0.42 +0.8
3,465,305 - Psyr_2888 0.42 +0.4
3,465,305 - Psyr_2888 0.42 -1.1
3,465,382 - Psyr_2888 0.47 -2.6
3,465,606 + Psyr_2888 0.61 -4.1
3,465,606 + Psyr_2888 0.61 -1.6
3,465,768 - Psyr_2888 0.71 +1.8
3,465,797 + Psyr_2888 0.73 -1.0
3,465,797 + Psyr_2888 0.73 -2.3
3,465,798 - Psyr_2888 0.73 -1.9
3,465,882 + Psyr_2888 0.78 +0.8
3,465,883 - Psyr_2888 0.78 -0.0
3,465,883 - Psyr_2888 0.78 -1.8
3,465,883 - Psyr_2888 0.78 -0.5
3,465,883 - Psyr_2888 0.78 +2.3
3,465,927 + Psyr_2888 0.81 +1.6
3,465,927 + Psyr_2888 0.81 +1.3
3,466,484 - Psyr_2889 0.25 +4.6
3,466,489 + Psyr_2889 0.26 -0.2
3,466,489 + Psyr_2889 0.26 +0.8
3,466,489 + Psyr_2889 0.26 +0.8
3,466,489 + Psyr_2889 0.26 +1.5
3,466,489 + Psyr_2889 0.26 +2.6
3,466,489 + Psyr_2889 0.26 +0.8
3,466,489 + Psyr_2889 0.26 +0.8
3,466,489 + Psyr_2889 0.26 -0.2
3,466,489 + Psyr_2889 0.26 +2.9
3,466,489 + Psyr_2889 0.26 -1.3
3,466,489 + Psyr_2889 0.26 -0.6
3,466,490 - Psyr_2889 0.26 +2.8
3,466,490 - Psyr_2889 0.26 -1.8
3,466,490 - Psyr_2889 0.26 +3.8
3,466,490 - Psyr_2889 0.26 +0.5
3,466,490 - Psyr_2889 0.26 +1.1
3,466,490 - Psyr_2889 0.26 -0.5
3,466,490 - Psyr_2889 0.26 +2.8
3,466,490 - Psyr_2889 0.26 +0.8
3,466,490 - Psyr_2889 0.26 -1.6
3,466,490 - Psyr_2889 0.26 -1.2
3,466,490 - Psyr_2889 0.26 -3.0
3,466,490 - Psyr_2889 0.26 -1.1
3,466,490 - Psyr_2889 0.26 +3.1
3,466,490 - Psyr_2889 0.26 +3.8
3,466,490 - Psyr_2889 0.26 +2.9
3,466,492 - Psyr_2889 0.26 -0.6
3,466,492 - Psyr_2889 0.26 -0.8
3,466,492 - Psyr_2889 0.26 +3.3
3,466,568 - +1.3
3,466,693 - Psyr_2889 0.48 +1.3
3,466,723 + Psyr_2889 0.51 +2.6
3,466,723 + Psyr_2889 0.51 +3.7
3,466,724 - Psyr_2889 0.51 -2.3
3,466,724 - Psyr_2889 0.51 +2.6
3,466,748 - Psyr_2889 0.54 -2.3
3,467,117 + -2.6
3,467,117 + +1.8
3,467,117 + +3.1
3,467,118 - -0.6
3,467,118 - -1.2
3,467,209 + +2.3
3,467,209 + -0.2
3,467,210 - -1.9
3,467,735 + Psyr_2890 0.67 +2.6
3,467,736 - Psyr_2890 0.67 -1.8
3,467,769 - Psyr_2890 0.72 +0.0
3,467,769 - Psyr_2890 0.72 -4.1
3,467,769 - Psyr_2890 0.72 +3.1
3,467,864 - Psyr_2890 0.84 +2.3
3,468,059 + +3.3
3,468,096 + Psyr_2891 0.11 +3.3
3,468,096 + Psyr_2891 0.11 -0.0
3,468,096 + Psyr_2891 0.11 +2.3
3,468,096 + Psyr_2891 0.11 +3.7
3,468,097 - Psyr_2891 0.11 -1.2
3,468,097 - Psyr_2891 0.11 -1.9
3,468,097 - Psyr_2891 0.11 +3.6
3,468,121 + Psyr_2891 0.14 -1.2

Or see this region's nucleotide sequence