Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2783

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2780 and Psyr_2781 are separated by 10 nucleotidesPsyr_2781 and Psyr_2782 are separated by 62 nucleotidesPsyr_2782 and Psyr_2783 are separated by 3 nucleotidesPsyr_2783 and Psyr_2784 are separated by 71 nucleotidesPsyr_2784 and Psyr_2785 overlap by 4 nucleotides Psyr_2780: Psyr_2780 - Phage tail tape measure protein lambda, at 3,364,992 to 3,368,477 _2780 Psyr_2781: Psyr_2781 - hypothetical protein, at 3,368,488 to 3,368,736 _2781 Psyr_2782: Psyr_2782 - hypothetical protein, at 3,368,799 to 3,369,182 _2782 Psyr_2783: Psyr_2783 - conserved hypothetical protein, at 3,369,186 to 3,369,842 _2783 Psyr_2784: Psyr_2784 - phage-related conserved hypothetical protein, at 3,369,914 to 3,370,324 _2784 Psyr_2785: Psyr_2785 - conserved hypothetical protein, at 3,370,321 to 3,370,977 _2785 Position (kb) 3369 3370Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3368.210 kb on + strandat 3368.210 kb on + strandat 3368.211 kb on - strandat 3368.557 kb on + strand, within Psyr_2781at 3368.557 kb on + strand, within Psyr_2781at 3368.558 kb on - strand, within Psyr_2781at 3368.609 kb on + strand, within Psyr_2781at 3368.610 kb on - strand, within Psyr_2781at 3368.777 kb on + strandat 3368.777 kb on + strandat 3368.837 kb on - strandat 3368.980 kb on - strand, within Psyr_2782at 3369.039 kb on - strand, within Psyr_2782at 3369.039 kb on - strand, within Psyr_2782at 3369.080 kb on + strand, within Psyr_2782at 3369.080 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.295 kb on + strand, within Psyr_2783at 3369.296 kb on - strand, within Psyr_2783at 3369.304 kb on + strand, within Psyr_2783at 3369.304 kb on + strand, within Psyr_2783at 3369.305 kb on - strand, within Psyr_2783at 3369.388 kb on + strand, within Psyr_2783at 3369.388 kb on + strand, within Psyr_2783at 3369.388 kb on + strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.915 kb on + strandat 3369.915 kb on + strandat 3369.915 kb on + strandat 3369.916 kb on - strandat 3369.916 kb on - strandat 3369.916 kb on - strandat 3369.916 kb on - strandat 3369.961 kb on + strand, within Psyr_2784at 3369.961 kb on + strand, within Psyr_2784at 3370.041 kb on + strand, within Psyr_2784at 3370.042 kb on - strand, within Psyr_2784at 3370.140 kb on + strand, within Psyr_2784at 3370.140 kb on + strand, within Psyr_2784at 3370.140 kb on + strand, within Psyr_2784at 3370.141 kb on - strand, within Psyr_2784at 3370.141 kb on - strand, within Psyr_2784at 3370.206 kb on + strand, within Psyr_2784at 3370.206 kb on + strand, within Psyr_2784at 3370.206 kb on + strand, within Psyr_2784at 3370.324 kb on + strandat 3370.325 kb on - strandat 3370.457 kb on + strand, within Psyr_2785at 3370.458 kb on - strand, within Psyr_2785at 3370.458 kb on - strand, within Psyr_2785at 3370.604 kb on + strand, within Psyr_2785at 3370.604 kb on + strand, within Psyr_2785at 3370.604 kb on + strand, within Psyr_2785at 3370.604 kb on + strand, within Psyr_2785at 3370.605 kb on - strand, within Psyr_2785at 3370.618 kb on + strand, within Psyr_2785at 3370.618 kb on + strand, within Psyr_2785at 3370.619 kb on - strand, within Psyr_2785at 3370.676 kb on + strand, within Psyr_2785at 3370.677 kb on - strand, within Psyr_2785at 3370.677 kb on - strand, within Psyr_2785

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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3,368,210 + +2.4
3,368,210 + +1.9
3,368,211 - +2.6
3,368,557 + Psyr_2781 0.28 +0.5
3,368,557 + Psyr_2781 0.28 +2.8
3,368,558 - Psyr_2781 0.28 +0.9
3,368,609 + Psyr_2781 0.49 -0.4
3,368,610 - Psyr_2781 0.49 +0.0
3,368,777 + -1.4
3,368,777 + -0.8
3,368,837 - +3.3
3,368,980 - Psyr_2782 0.47 -0.9
3,369,039 - Psyr_2782 0.62 +1.4
3,369,039 - Psyr_2782 0.62 -1.5
3,369,080 + Psyr_2782 0.73 -1.5
3,369,080 + Psyr_2782 0.73 -1.3
3,369,082 + Psyr_2782 0.74 -1.9
3,369,082 + Psyr_2782 0.74 +2.6
3,369,082 + Psyr_2782 0.74 -1.7
3,369,082 + Psyr_2782 0.74 -0.9
3,369,082 + Psyr_2782 0.74 +3.0
3,369,082 + Psyr_2782 0.74 +0.4
3,369,082 + Psyr_2782 0.74 +0.9
3,369,082 + Psyr_2782 0.74 +2.4
3,369,082 + Psyr_2782 0.74 +2.4
3,369,082 + Psyr_2782 0.74 +2.6
3,369,082 + Psyr_2782 0.74 +2.4
3,369,082 + Psyr_2782 0.74 +2.6
3,369,083 - Psyr_2782 0.74 +3.0
3,369,083 - Psyr_2782 0.74 -0.6
3,369,083 - Psyr_2782 0.74 +3.8
3,369,083 - Psyr_2782 0.74 -0.5
3,369,083 - Psyr_2782 0.74 +0.5
3,369,083 - Psyr_2782 0.74 +2.4
3,369,083 - Psyr_2782 0.74 +2.1
3,369,295 + Psyr_2783 0.17 +0.0
3,369,296 - Psyr_2783 0.17 -2.5
3,369,304 + Psyr_2783 0.18 +0.1
3,369,304 + Psyr_2783 0.18 -0.4
3,369,305 - Psyr_2783 0.18 +0.1
3,369,388 + Psyr_2783 0.31 +3.0
3,369,388 + Psyr_2783 0.31 +2.8
3,369,388 + Psyr_2783 0.31 +2.1
3,369,389 - Psyr_2783 0.31 +0.6
3,369,389 - Psyr_2783 0.31 +3.5
3,369,389 - Psyr_2783 0.31 +2.1
3,369,389 - Psyr_2783 0.31 -1.1
3,369,915 + +3.3
3,369,915 + -0.6
3,369,915 + +1.8
3,369,916 - -1.5
3,369,916 - -2.1
3,369,916 - -0.2
3,369,916 - -2.1
3,369,961 + Psyr_2784 0.11 -0.4
3,369,961 + Psyr_2784 0.11 -0.8
3,370,041 + Psyr_2784 0.31 +0.6
3,370,042 - Psyr_2784 0.31 -1.9
3,370,140 + Psyr_2784 0.55 -1.2
3,370,140 + Psyr_2784 0.55 -0.2
3,370,140 + Psyr_2784 0.55 -3.0
3,370,141 - Psyr_2784 0.55 -0.9
3,370,141 - Psyr_2784 0.55 -3.4
3,370,206 + Psyr_2784 0.71 -0.6
3,370,206 + Psyr_2784 0.71 -2.3
3,370,206 + Psyr_2784 0.71 -0.6
3,370,324 + +3.0
3,370,325 - -0.8
3,370,457 + Psyr_2785 0.21 -0.5
3,370,458 - Psyr_2785 0.21 -1.4
3,370,458 - Psyr_2785 0.21 +0.5
3,370,604 + Psyr_2785 0.43 -0.2
3,370,604 + Psyr_2785 0.43 +3.5
3,370,604 + Psyr_2785 0.43 -1.9
3,370,604 + Psyr_2785 0.43 +4.1
3,370,605 - Psyr_2785 0.43 -0.4
3,370,618 + Psyr_2785 0.45 +0.2
3,370,618 + Psyr_2785 0.45 +0.8
3,370,619 - Psyr_2785 0.45 +2.1
3,370,676 + Psyr_2785 0.54 +1.4
3,370,677 - Psyr_2785 0.54 +1.4
3,370,677 - Psyr_2785 0.54 +1.8

Or see this region's nucleotide sequence