Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2770

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,353,777	+				+1.8
3,353,778	-				+2.1
3,353,807	+				+1.4
3,353,808	-				-1.4
3,353,844	+				-0.6
3,353,844	+				-1.0
3,353,845	-				+3.0
3,353,845	-				-2.7
3,353,863	+				+2.6
3,353,863	+				-0.6
3,353,864	-				-3.4
3,353,874	+				+4.1
3,353,874	+				+2.1
3,353,875	-				-2.5
3,353,889	+				-2.6
3,353,889	+				-2.6
3,353,943	+				-0.2
3,353,943	+				+1.8
3,353,943	+				-1.5
3,353,948	-				-1.4
3,353,990	+				+2.4
3,353,990	+				+2.6
3,353,990	+				+2.1
3,353,991	-				-0.6
3,353,991	-				-3.8
3,353,991	-				-2.0
3,354,046	+				-0.2
3,354,315	+		Psyr_2768	0.64	+0.8
3,354,421	+				+0.8
3,354,422	-				-1.3
3,354,422	-				+1.4
3,354,447	+				-4.6
3,354,447	+				-5.3
3,354,447	+				-0.2
3,354,447	+				-0.2
3,354,447	+				+2.1
3,354,447	+				-3.3
3,354,448	-				+1.3
3,354,555	+		Psyr_2769	0.30	+3.1
3,354,555	+		Psyr_2769	0.30	+1.4
3,354,556	-		Psyr_2769	0.30	-2.0
3,354,556	-		Psyr_2769	0.30	-2.0
3,354,585	-		Psyr_2769	0.39	+2.1
3,354,610	+		Psyr_2769	0.47	-4.2
3,354,659	-		Psyr_2769	0.63	-0.9
3,354,691	+		Psyr_2769	0.73	-0.2
3,354,691	+		Psyr_2769	0.73	+2.4
3,354,728	+		Psyr_2769	0.85	-4.6
3,354,777	-				-1.2
3,354,798	+				-1.5
3,354,798	+				-3.8
3,354,798	+				-0.2
3,354,798	+				+0.4
3,354,799	-				-1.7
3,354,800	+				+1.8
3,354,800	+				-0.2
3,354,801	-				+3.5
3,354,801	-				-2.1
3,354,801	-				-2.5
3,354,870	+				-0.2
3,354,871	-				-1.9
3,354,896	+		Psyr_2770	0.11	-2.8
3,354,904	-		Psyr_2770	0.12	+0.2
3,354,904	-		Psyr_2770	0.12	-0.6
3,354,981	-		Psyr_2770	0.19	-0.3
3,355,096	+		Psyr_2770	0.29	+1.8
3,355,097	-		Psyr_2770	0.29	-1.9
3,355,160	+		Psyr_2770	0.35	+0.8
3,355,160	+		Psyr_2770	0.35	+1.8
3,355,161	-		Psyr_2770	0.35	-2.5
3,355,175	-		Psyr_2770	0.36	-0.2
3,355,297	-		Psyr_2770	0.47	-0.2
3,355,300	+		Psyr_2770	0.48	-0.4
3,355,301	-		Psyr_2770	0.48	-2.1
3,355,301	-		Psyr_2770	0.48	+1.8
3,355,324	-		Psyr_2770	0.50	-3.3
3,355,340	-		Psyr_2770	0.51	-0.6
3,355,395	+		Psyr_2770	0.56	-2.8
3,355,593	+		Psyr_2770	0.74	-1.9
3,355,700	+		Psyr_2770	0.84	-1.4
3,355,701	-		Psyr_2770	0.84	+3.6
3,355,751	+		Psyr_2770	0.88	+2.6
3,355,751	+		Psyr_2770	0.88	-3.1
3,355,869	-				+1.5
3,356,010	+		Psyr_2771	0.15	-0.2
3,356,010	+		Psyr_2771	0.15	+1.4
3,356,011	-		Psyr_2771	0.16	+0.8
3,356,069	+		Psyr_2771	0.24	+0.8
3,356,070	-		Psyr_2771	0.24	+3.9
3,356,070	-		Psyr_2771	0.24	-2.5
3,356,074	-		Psyr_2771	0.25	-1.1
3,356,106	+		Psyr_2771	0.29	+2.4
3,356,109	+		Psyr_2771	0.30	-0.2
3,356,208	-		Psyr_2771	0.44	-2.6
3,356,239	+		Psyr_2771	0.49	-0.2
3,356,328	+		Psyr_2771	0.62	-1.4
3,356,328	+		Psyr_2771	0.62	+0.8
3,356,328	+		Psyr_2771	0.62	-0.2
3,356,328	+		Psyr_2771	0.62	+3.4
3,356,328	+		Psyr_2771	0.62	-0.2
3,356,328	+		Psyr_2771	0.62	-2.5
3,356,329	-		Psyr_2771	0.62	-2.1
3,356,329	-		Psyr_2771	0.62	+0.2
3,356,329	-		Psyr_2771	0.62	-1.4
3,356,329	-		Psyr_2771	0.62	-1.7
3,356,357	+		Psyr_2771	0.66	+1.4
3,356,393	+		Psyr_2771	0.71	+3.0
3,356,394	-		Psyr_2771	0.71	-1.3
3,356,454	+		Psyr_2771	0.80	+0.1
3,356,455	-		Psyr_2771	0.80	-0.8
3,356,455	-		Psyr_2771	0.80	-2.6
3,356,485	+		Psyr_2771	0.85	-2.0
3,356,486	-		Psyr_2771	0.85	-1.9
3,356,486	-		Psyr_2771	0.85	-0.6
3,356,544	-				-1.3
3,356,605	-				+0.6
3,356,619	+				-1.6
3,356,619	+				-0.9
3,356,619	+				+2.1
3,356,649	-				+2.1
3,356,667	-				-0.4
3,356,715	+				+4.3
3,356,716	-				-1.4
3,356,723	+				+3.0
3,356,724	-				+2.6
3,356,724	-				-1.7
3,356,724	-				-2.1
3,356,817	+				+2.6