Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2766

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2764 and Psyr_2765 overlap by 4 nucleotidesPsyr_2765 and Psyr_2766 are separated by 12 nucleotidesPsyr_2766 and Psyr_2767 overlap by 4 nucleotidesPsyr_2767 and Psyr_2768 are separated by 295 nucleotides Psyr_2764: Psyr_2764 - conserved hypothetical protein, at 3,351,260 to 3,352,504 _2764 Psyr_2765: Psyr_2765 - conserved domain protein, at 3,352,501 to 3,352,713 _2765 Psyr_2766: Psyr_2766 - conserved hypothetical protein, at 3,352,726 to 3,353,253 _2766 Psyr_2767: Psyr_2767 - Glycoside hydrolase, family 19, at 3,353,250 to 3,353,783 _2767 Psyr_2768: Psyr_2768 - tail fiber assembly domain protein, at 3,354,079 to 3,354,447 _2768 Position (kb) 3352 3353 3354Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3352.003 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.032 kb on + strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.033 kb on - strand, within Psyr_2764at 3352.054 kb on - strand, within Psyr_2764at 3352.332 kb on + strand, within Psyr_2764at 3352.333 kb on - strand, within Psyr_2764at 3352.539 kb on + strand, within Psyr_2765at 3352.685 kb on + strand, within Psyr_2765at 3352.685 kb on + strand, within Psyr_2765at 3352.685 kb on + strand, within Psyr_2765at 3352.686 kb on - strand, within Psyr_2765at 3352.686 kb on - strand, within Psyr_2765at 3352.704 kb on + strandat 3352.716 kb on + strandat 3352.717 kb on - strandat 3352.738 kb on - strandat 3352.999 kb on - strand, within Psyr_2766at 3352.999 kb on - strand, within Psyr_2766at 3353.186 kb on + strand, within Psyr_2766at 3353.278 kb on + strandat 3353.480 kb on - strand, within Psyr_2767at 3353.546 kb on + strand, within Psyr_2767at 3353.686 kb on + strand, within Psyr_2767at 3353.687 kb on - strand, within Psyr_2767at 3353.777 kb on + strandat 3353.778 kb on - strandat 3353.807 kb on + strandat 3353.808 kb on - strandat 3353.844 kb on + strandat 3353.844 kb on + strandat 3353.845 kb on - strandat 3353.845 kb on - strandat 3353.863 kb on + strandat 3353.863 kb on + strandat 3353.864 kb on - strandat 3353.874 kb on + strandat 3353.874 kb on + strandat 3353.875 kb on - strandat 3353.889 kb on + strandat 3353.889 kb on + strandat 3353.943 kb on + strandat 3353.943 kb on + strandat 3353.943 kb on + strandat 3353.948 kb on - strandat 3353.990 kb on + strandat 3353.990 kb on + strandat 3353.990 kb on + strandat 3353.991 kb on - strandat 3353.991 kb on - strandat 3353.991 kb on - strandat 3354.046 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
3,352,003 + Psyr_2764 0.60 +3.1
3,352,032 + Psyr_2764 0.62 +2.8
3,352,032 + Psyr_2764 0.62 +2.6
3,352,032 + Psyr_2764 0.62 -1.9
3,352,032 + Psyr_2764 0.62 -3.2
3,352,032 + Psyr_2764 0.62 -0.8
3,352,032 + Psyr_2764 0.62 +3.0
3,352,032 + Psyr_2764 0.62 +3.6
3,352,033 - Psyr_2764 0.62 -1.2
3,352,033 - Psyr_2764 0.62 -1.4
3,352,033 - Psyr_2764 0.62 -0.7
3,352,033 - Psyr_2764 0.62 +3.6
3,352,033 - Psyr_2764 0.62 +1.8
3,352,033 - Psyr_2764 0.62 +3.3
3,352,033 - Psyr_2764 0.62 -1.7
3,352,054 - Psyr_2764 0.64 +3.0
3,352,332 + Psyr_2764 0.86 +4.7
3,352,333 - Psyr_2764 0.86 +1.8
3,352,539 + Psyr_2765 0.18 -0.2
3,352,685 + Psyr_2765 0.86 +2.8
3,352,685 + Psyr_2765 0.86 +2.1
3,352,685 + Psyr_2765 0.86 +0.2
3,352,686 - Psyr_2765 0.87 +3.1
3,352,686 - Psyr_2765 0.87 -1.6
3,352,704 + +2.6
3,352,716 + -1.6
3,352,717 - +0.1
3,352,738 - -1.3
3,352,999 - Psyr_2766 0.52 +3.0
3,352,999 - Psyr_2766 0.52 +0.8
3,353,186 + Psyr_2766 0.87 +2.1
3,353,278 + -1.4
3,353,480 - Psyr_2767 0.43 -2.9
3,353,546 + Psyr_2767 0.55 +0.8
3,353,686 + Psyr_2767 0.82 -2.4
3,353,687 - Psyr_2767 0.82 +1.4
3,353,777 + +1.8
3,353,778 - +2.1
3,353,807 + +1.4
3,353,808 - -1.4
3,353,844 + -0.6
3,353,844 + -1.0
3,353,845 - +3.0
3,353,845 - -2.7
3,353,863 + +2.6
3,353,863 + -0.6
3,353,864 - -3.4
3,353,874 + +4.1
3,353,874 + +2.1
3,353,875 - -2.5
3,353,889 + -2.6
3,353,889 + -2.6
3,353,943 + -0.2
3,353,943 + +1.8
3,353,943 + -1.5
3,353,948 - -1.4
3,353,990 + +2.4
3,353,990 + +2.6
3,353,990 + +2.1
3,353,991 - -0.6
3,353,991 - -3.8
3,353,991 - -2.0
3,354,046 + -0.2

Or see this region's nucleotide sequence