Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2623

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
3,182,168	+		Psyr_2622	0.75	+2.6
3,182,168	+		Psyr_2622	0.75	-0.8
3,182,169	-		Psyr_2622	0.75	+2.6
3,182,244	+				-2.3
3,182,244	+		Psyr_2622	0.78	+2.4
3,182,245	-		Psyr_2622	0.78	-0.8
3,182,339	+		Psyr_2622	0.81	+2.6
3,182,340	-		Psyr_2622	0.81	+1.4
3,182,424	+		Psyr_2622	0.84	-1.0
3,182,424	+		Psyr_2622	0.84	-0.2
3,182,424	+		Psyr_2622	0.84	-0.5
3,182,425	-		Psyr_2622	0.84	-0.2
3,182,425	-		Psyr_2622	0.84	-0.2
3,182,425	-		Psyr_2622	0.84	+2.6
3,182,425	-		Psyr_2622	0.84	-1.5
3,182,425	-		Psyr_2622	0.84	+1.4
3,182,426	+		Psyr_2622	0.84	+3.3
3,182,427	-		Psyr_2622	0.84	+1.4
3,182,428	+		Psyr_2622	0.84	+0.8
3,182,460	+		Psyr_2622	0.85	-0.6
3,182,461	-		Psyr_2622	0.85	+3.1
3,182,822	+				+0.8
3,182,823	-				+3.1
3,182,825	+				+3.0
3,182,825	+				+3.1
3,182,826	-				-1.9
3,182,826	-				+1.0
3,182,853	+				+1.4
3,182,853	+				-0.8
3,182,857	+				-0.7
3,182,857	+				-1.6
3,182,858	-				+3.9
3,183,072	-				+3.5
3,183,096	+				-1.6
3,183,097	-				+2.1
3,183,098	+				-1.5
3,183,098	+				-3.4
3,183,098	+				+3.3
3,183,099	-				-2.2
3,183,099	-				+0.8
3,183,099	-				+3.0
3,183,099	-				-0.4
3,183,099	-				-1.4
3,183,301	+		Psyr_2623	0.24	+0.7
3,183,565	-		Psyr_2623	0.45	-0.8
3,183,565	-		Psyr_2623	0.45	+0.5
3,183,592	+		Psyr_2623	0.48	-1.6
3,183,673	-		Psyr_2623	0.54	+1.4
3,183,673	-		Psyr_2623	0.54	-3.5
3,183,673	-		Psyr_2623	0.54	+2.1
3,183,677	-		Psyr_2623	0.54	-2.7
3,183,740	+		Psyr_2623	0.59	-1.6
3,183,741	-		Psyr_2623	0.59	-0.9
3,183,741	-		Psyr_2623	0.59	-1.4
3,183,743	+		Psyr_2623	0.60	+1.0
3,183,744	-		Psyr_2623	0.60	+0.4
3,183,764	+		Psyr_2623	0.61	+0.2
3,183,904	+		Psyr_2623	0.72	+2.4
3,183,904	+		Psyr_2623	0.72	+3.0
3,183,904	+		Psyr_2623	0.72	-0.5
3,183,905	-		Psyr_2623	0.72	+3.5
3,183,906	+		Psyr_2623	0.72	+2.4
3,183,907	-		Psyr_2623	0.73	+2.6
3,183,949	+		Psyr_2623	0.76	+0.8
3,183,968	-		Psyr_2623	0.77	+0.8
3,184,298	+				-2.2
3,184,302	+				-1.1
3,184,303	-				+3.8
3,184,327	-				-1.4
3,184,327	-				+0.5
3,184,327	-				+3.3
3,184,327	-				+1.0
3,184,597	+		Psyr_2624	0.58	+1.4
3,184,799	+				-1.4
3,184,802	+				-2.3
3,184,803	-				-0.3
3,184,848	-				-3.6
3,184,938	+		Psyr_2625	0.17	+0.0
3,184,970	+		Psyr_2625	0.21	+2.8
3,184,970	+		Psyr_2625	0.21	+3.4
3,184,979	-		Psyr_2625	0.22	-1.0
3,185,007	+		Psyr_2625	0.26	-2.9
3,185,144	+		Psyr_2625	0.44	-2.4
3,185,144	+		Psyr_2625	0.44	+0.5
3,185,145	-		Psyr_2625	0.45	-0.8
3,185,145	-		Psyr_2625	0.45	+0.5
3,185,145	-		Psyr_2625	0.45	+1.8
3,185,148	+		Psyr_2625	0.45	+2.1
3,185,149	-		Psyr_2625	0.45	-1.6
3,185,179	+		Psyr_2625	0.49	-1.4
3,185,222	+		Psyr_2625	0.55	-0.1
3,185,222	+		Psyr_2625	0.55	-0.2
3,185,223	-		Psyr_2625	0.55	-4.2
3,185,243	+		Psyr_2625	0.58	-0.3
3,185,243	+		Psyr_2625	0.58	+2.6
3,185,243	+		Psyr_2625	0.58	-1.4
3,185,244	-		Psyr_2625	0.58	-0.9
3,185,246	+		Psyr_2625	0.58	+2.1
3,185,246	+		Psyr_2625	0.58	-0.2
3,185,249	+		Psyr_2625	0.59	+2.6
3,185,249	+		Psyr_2625	0.59	+1.8
3,185,249	+		Psyr_2625	0.59	+3.1
3,185,249	+		Psyr_2625	0.59	+2.6
3,185,249	+		Psyr_2625	0.59	+2.1
3,185,250	-		Psyr_2625	0.59	-1.5
3,185,250	-		Psyr_2625	0.59	-0.2