Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2551

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2549 and Psyr_2550 overlap by 4 nucleotidesPsyr_2550 and Psyr_2551 overlap by 4 nucleotidesPsyr_2551 and Psyr_2552 are separated by 12 nucleotidesPsyr_2552 and Psyr_2553 are separated by 1 nucleotides Psyr_2549: Psyr_2549 - hypothetical protein, at 2,963,117 to 2,964,187 _2549 Psyr_2550: Psyr_2550 - hypothetical protein, at 2,964,184 to 2,964,738 _2550 Psyr_2551: Psyr_2551 - acetylornithine aminotransferase apoenzyme, at 2,964,735 to 2,965,991 _2551 Psyr_2552: Psyr_2552 - cyclase/dehydrase, at 2,966,004 to 2,966,471 _2552 Psyr_2553: Psyr_2553 - Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases-related enzyme, at 2,966,473 to 2,967,582 _2553 Position (kb) 2964 2965 2966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 2963.934 kb on - strand, within Psyr_2549at 2964.107 kb on + strandat 2964.107 kb on + strandat 2964.107 kb on + strandat 2964.166 kb on + strandat 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.317 kb on - strand, within Psyr_2550at 2964.317 kb on - strand, within Psyr_2550at 2964.317 kb on - strand, within Psyr_2550at 2964.735 kb on - strandat 2964.802 kb on - strandat 2964.833 kb on + strandat 2964.834 kb on - strandat 2965.095 kb on + strand, within Psyr_2551at 2965.096 kb on - strand, within Psyr_2551at 2965.224 kb on + strand, within Psyr_2551at 2965.224 kb on + strand, within Psyr_2551at 2965.225 kb on - strand, within Psyr_2551at 2965.561 kb on - strand, within Psyr_2551at 2965.618 kb on - strand, within Psyr_2551at 2965.815 kb on + strand, within Psyr_2551at 2965.815 kb on + strand, within Psyr_2551at 2965.816 kb on - strand, within Psyr_2551at 2965.816 kb on - strand, within Psyr_2551at 2965.816 kb on - strand, within Psyr_2551at 2965.816 kb on - strand, within Psyr_2551at 2965.816 kb on - strand, within Psyr_2551at 2965.899 kb on + strandat 2965.900 kb on - strandat 2966.015 kb on - strandat 2966.015 kb on - strandat 2966.142 kb on + strand, within Psyr_2552at 2966.143 kb on - strand, within Psyr_2552at 2966.143 kb on - strand, within Psyr_2552at 2966.153 kb on + strand, within Psyr_2552at 2966.154 kb on - strand, within Psyr_2552at 2966.154 kb on - strand, within Psyr_2552at 2966.848 kb on + strand, within Psyr_2553at 2966.848 kb on + strand, within Psyr_2553at 2966.849 kb on - strand, within Psyr_2553at 2966.849 kb on - strand, within Psyr_2553at 2966.849 kb on - strand, within Psyr_2553at 2966.899 kb on + strand, within Psyr_2553

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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2,963,934 - Psyr_2549 0.76 -0.6
2,964,107 + +1.0
2,964,107 + +2.4
2,964,107 + +3.5
2,964,166 + +3.4
2,964,245 + Psyr_2550 0.11 -0.3
2,964,245 + Psyr_2550 0.11 +2.4
2,964,245 + Psyr_2550 0.11 -0.9
2,964,245 + Psyr_2550 0.11 -1.2
2,964,245 + Psyr_2550 0.11 -0.2
2,964,245 + Psyr_2550 0.11 +0.1
2,964,246 - Psyr_2550 0.11 +2.1
2,964,246 - Psyr_2550 0.11 +4.8
2,964,246 - Psyr_2550 0.11 +3.3
2,964,246 - Psyr_2550 0.11 +4.6
2,964,246 - Psyr_2550 0.11 -1.7
2,964,246 - Psyr_2550 0.11 -1.0
2,964,246 - Psyr_2550 0.11 +1.1
2,964,317 - Psyr_2550 0.24 +2.4
2,964,317 - Psyr_2550 0.24 -1.9
2,964,317 - Psyr_2550 0.24 -0.7
2,964,735 - +0.0
2,964,802 - -2.1
2,964,833 + +0.8
2,964,834 - +3.4
2,965,095 + Psyr_2551 0.29 -0.4
2,965,096 - Psyr_2551 0.29 -0.9
2,965,224 + Psyr_2551 0.39 +2.6
2,965,224 + Psyr_2551 0.39 +3.5
2,965,225 - Psyr_2551 0.39 +2.1
2,965,561 - Psyr_2551 0.66 -4.3
2,965,618 - Psyr_2551 0.70 +1.4
2,965,815 + Psyr_2551 0.86 +2.4
2,965,815 + Psyr_2551 0.86 +2.4
2,965,816 - Psyr_2551 0.86 +1.4
2,965,816 - Psyr_2551 0.86 +4.4
2,965,816 - Psyr_2551 0.86 -2.3
2,965,816 - Psyr_2551 0.86 +2.4
2,965,816 - Psyr_2551 0.86 +3.5
2,965,899 + +3.3
2,965,900 - -0.5
2,966,015 - +2.4
2,966,015 - -1.6
2,966,142 + Psyr_2552 0.29 -1.2
2,966,143 - Psyr_2552 0.30 +2.1
2,966,143 - Psyr_2552 0.30 +0.4
2,966,153 + Psyr_2552 0.32 -1.7
2,966,154 - Psyr_2552 0.32 +1.4
2,966,154 - Psyr_2552 0.32 -0.6
2,966,848 + Psyr_2553 0.34 +1.0
2,966,848 + Psyr_2553 0.34 +0.8
2,966,849 - Psyr_2553 0.34 +3.6
2,966,849 - Psyr_2553 0.34 +0.6
2,966,849 - Psyr_2553 0.34 +2.6
2,966,899 + Psyr_2553 0.38 +2.4

Or see this region's nucleotide sequence