Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2342

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,717,278	-				-3.9
2,717,278	-				-1.0
2,717,344	+		Psyr_2341	0.31	-0.1
2,717,345	-		Psyr_2341	0.32	+0.5
2,717,345	-		Psyr_2341	0.32	+0.3
2,717,347	+		Psyr_2341	0.32	+0.9
2,717,348	-		Psyr_2341	0.33	-1.3
2,717,348	-		Psyr_2341	0.33	+2.5
2,717,348	-		Psyr_2341	0.33	+1.5
2,717,452	+		Psyr_2341	0.70	+2.5
2,717,452	+		Psyr_2341	0.70	-0.9
2,717,452	+		Psyr_2341	0.70	+2.2
2,717,452	+		Psyr_2341	0.70	+2.2
2,717,452	+		Psyr_2341	0.70	-1.9
2,717,453	-		Psyr_2341	0.70	+1.0
2,717,453	-		Psyr_2341	0.70	+3.2
2,717,453	-		Psyr_2341	0.70	+2.9
2,717,542	-				+3.5
2,717,542	-				+1.0
2,717,628	+				-1.5
2,717,629	-				-1.2
2,717,647	-				+3.0
2,717,864	+				+2.7
2,717,865	-				+4.5
2,717,865	-				+1.5
2,717,867	+				-1.7
2,717,867	+				+1.9
2,717,868	-				+1.2
2,717,881	-				-1.3
2,717,891	+				-1.2
2,717,891	+				-1.9
2,717,891	+				-2.2
2,717,891	+				-2.7
2,717,892	-				+3.0
2,717,892	-				+2.2
2,717,902	+				-0.4
2,717,935	+				+3.0
2,717,935	+				-3.9
2,717,935	+				+0.9
2,717,935	+				-1.8
2,717,936	-				+0.9
2,717,936	-				-1.1
2,717,941	+				-1.4
2,718,039	+				-1.2
2,718,040	-				-3.6
2,718,040	-				+1.5
2,718,040	-				+3.7
2,718,040	-				+1.5
2,718,043	+				+2.7
2,718,044	-				-1.5
2,718,058	+				-1.8
2,718,131	-				+2.2
2,718,131	-				+3.8
2,718,131	-				+1.5
2,718,131	-				+1.9
2,718,818	+		Psyr_2342	0.41	-3.5
2,718,819	-		Psyr_2342	0.41	-0.7
2,718,824	+		Psyr_2342	0.41	+2.2
2,718,825	-		Psyr_2342	0.41	+0.2
2,719,065	+		Psyr_2342	0.56	+3.2
2,719,127	-		Psyr_2342	0.60	-2.8
2,719,586	+		Psyr_2342	0.89	+3.2
2,719,587	-		Psyr_2342	0.90	-1.1
2,719,671	+				+0.9
2,719,671	+				+0.9
2,719,671	+				-0.5
2,719,672	-				+0.3
2,719,672	-				-1.5
2,719,672	-				+4.0
2,719,748	+				+1.9
2,719,748	+				+1.9
2,719,748	+				+0.0
2,719,748	+				+2.2
2,719,749	-				-0.9
2,719,749	-				+1.9
2,719,749	-				+1.5
2,719,749	-				-1.0
2,719,749	-				+0.3
2,719,749	-				+0.5
2,719,966	+		Psyr_2343	0.25	+1.9
2,720,001	+		Psyr_2343	0.31	+0.9
2,720,001	+		Psyr_2343	0.31	+0.5
2,720,001	+		Psyr_2343	0.31	-0.1
2,720,001	+		Psyr_2343	0.31	-0.1
2,720,002	-		Psyr_2343	0.31	+1.9
2,720,002	-		Psyr_2343	0.31	-0.6
2,720,148	+		Psyr_2343	0.57	+0.9
2,720,148	+		Psyr_2343	0.57	-0.8
2,720,148	+		Psyr_2343	0.57	-0.8
2,720,148	+		Psyr_2343	0.57	+2.5
2,720,148	+		Psyr_2343	0.57	+1.0
2,720,148	+		Psyr_2343	0.57	-4.4
2,720,148	+		Psyr_2343	0.57	+3.9
2,720,149	-		Psyr_2343	0.57	+0.5
2,720,149	-		Psyr_2343	0.57	+3.7
2,720,149	-		Psyr_2343	0.57	-0.7
2,720,149	-		Psyr_2343	0.57	+0.5
2,720,149	-		Psyr_2343	0.57	-0.1
2,720,149	-		Psyr_2343	0.57	-1.4
2,720,149	-		Psyr_2343	0.57	+3.2
2,720,150	+		Psyr_2343	0.57	-2.4
2,720,150	+		Psyr_2343	0.57	+1.0
2,720,150	+		Psyr_2343	0.57	-2.1
2,720,150	+		Psyr_2343	0.57	+3.3
2,720,150	+		Psyr_2343	0.57	+2.2
2,720,150	+		Psyr_2343	0.57	-0.1
2,720,150	+		Psyr_2343	0.57	-0.4
2,720,150	+		Psyr_2343	0.57	-3.6
2,720,151	-		Psyr_2343	0.57	-0.8
2,720,151	-		Psyr_2343	0.57	-1.7
2,720,151	-		Psyr_2343	0.57	+2.7
2,720,151	-		Psyr_2343	0.57	+1.9
2,720,151	-		Psyr_2343	0.57	+2.7
2,720,151	-		Psyr_2343	0.57	-1.5
2,720,151	-		Psyr_2343	0.57	+3.0
2,720,152	+		Psyr_2343	0.57	-3.3
2,720,152	+		Psyr_2343	0.57	-0.0
2,720,152	+		Psyr_2343	0.57	-3.2
2,720,152	+		Psyr_2343	0.57	-1.9
2,720,152	+		Psyr_2343	0.57	+3.0
2,720,152	+		Psyr_2343	0.57	-2.3
2,720,152	+		Psyr_2343	0.57	-0.5
2,720,152	+		Psyr_2343	0.57	+0.6
2,720,153	-		Psyr_2343	0.58	-0.5
2,720,153	-		Psyr_2343	0.58	-0.8
2,720,206	+		Psyr_2343	0.67	-2.5
2,720,206	+		Psyr_2343	0.67	+1.5
2,720,206	+		Psyr_2343	0.67	-3.9
2,720,206	+		Psyr_2343	0.67	+3.0
2,720,207	-		Psyr_2343	0.67	-0.6
2,720,207	-		Psyr_2343	0.67	-1.1
2,720,312	-		Psyr_2343	0.85	+0.6
2,720,435	+				-0.3
2,720,435	+				-2.3
2,720,435	+				-1.7
2,720,436	-				+2.9
2,720,440	+				+3.0
2,720,440	+				-1.5
2,720,454	+				+1.2
2,720,520	+		Psyr_2344	0.26	-0.1
2,720,521	-		Psyr_2344	0.27	-0.5
2,720,521	-		Psyr_2344	0.27	+3.5
2,720,521	-		Psyr_2344	0.27	-1.7
2,720,534	+		Psyr_2344	0.32	-0.8
2,720,535	-		Psyr_2344	0.32	-0.8
2,720,535	-		Psyr_2344	0.32	+2.2