Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2214

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,572,525	+		Psyr_2213	0.83	-1.7
2,572,526	-		Psyr_2213	0.83	-1.8
2,572,526	-		Psyr_2213	0.83	+0.9
2,572,602	+				-2.3
2,572,603	-				+0.0
2,572,765	+				-1.7
2,572,766	-				-0.2
2,572,796	+				-1.1
2,572,797	-				-0.5
2,572,797	-				+3.0
2,572,818	+				-1.5
2,572,824	+				-2.1
2,572,824	+				+0.9
2,572,828	+				+0.0
2,572,828	+				-2.0
2,572,828	+				-0.5
2,572,828	+				-2.4
2,572,828	+				+1.9
2,572,829	-				+0.4
2,572,829	-				+1.5
2,572,829	-				+4.0
2,572,829	-				-1.6
2,572,950	+				-2.0
2,572,950	+				-1.5
2,572,951	-				+3.2
2,572,953	+				-1.2
2,572,996	+				+3.0
2,572,997	-				-3.3
2,573,096	-				+0.9
2,573,096	-				+0.9
2,573,101	+				-2.1
2,573,102	-				-2.1
2,573,108	-				-0.1
2,573,108	-				-1.0
2,573,108	-				-3.5
2,573,213	+				-1.5
2,573,261	+				+2.5
2,573,261	+				-1.1
2,573,262	-				+0.6
2,573,269	+				-2.7
2,573,270	-				-0.1
2,573,270	-				-1.5
2,573,270	-				+0.9
2,573,270	-				-1.8
2,573,277	+				-1.2
2,573,277	+				-1.0
2,573,278	-				+0.4
2,573,285	+				+2.5
2,573,286	-				-1.7
2,573,286	-				+0.9
2,573,537	-		Psyr_2214	0.11	+1.4
2,573,588	-		Psyr_2214	0.13	-2.5
2,573,635	+		Psyr_2214	0.15	-2.5
2,573,635	+		Psyr_2214	0.15	+3.9
2,573,635	+		Psyr_2214	0.15	+0.9
2,573,636	-		Psyr_2214	0.16	+2.2
2,573,637	+		Psyr_2214	0.16	-2.0
2,573,637	+		Psyr_2214	0.16	+3.9
2,573,725	+		Psyr_2214	0.20	-1.0
2,573,726	-		Psyr_2214	0.20	+2.7
2,573,884	+		Psyr_2214	0.27	-1.3
2,573,938	+		Psyr_2214	0.30	-3.5
2,573,938	+		Psyr_2214	0.30	-1.4
2,573,938	+		Psyr_2214	0.30	-1.3
2,574,001	+		Psyr_2214	0.33	+1.4
2,574,001	+		Psyr_2214	0.33	-4.0
2,574,001	+		Psyr_2214	0.33	+2.7
2,574,001	+		Psyr_2214	0.33	-1.3
2,574,001	+		Psyr_2214	0.33	-0.6
2,574,002	-		Psyr_2214	0.33	-0.1
2,574,002	-		Psyr_2214	0.33	-1.7
2,574,034	+		Psyr_2214	0.34	+3.0
2,574,034	+		Psyr_2214	0.34	+3.4
2,574,035	-		Psyr_2214	0.34	-1.7
2,574,035	-		Psyr_2214	0.34	-1.9
2,574,035	-		Psyr_2214	0.34	-2.6
2,574,319	+		Psyr_2214	0.48	+1.4
2,574,367	+				+1.9
2,574,367	+		Psyr_2214	0.50	-0.4
2,574,367	+		Psyr_2214	0.50	+3.0
2,574,368	-		Psyr_2214	0.50	+2.9
2,574,368	-		Psyr_2214	0.50	-2.7
2,574,368	-		Psyr_2214	0.50	+0.4
2,574,368	-		Psyr_2214	0.50	-1.2
2,574,368	-		Psyr_2214	0.50	-0.4
2,574,401	-		Psyr_2214	0.51	-1.0
2,574,597	+		Psyr_2214	0.61	+2.7
2,574,616	+		Psyr_2214	0.61	-0.1
2,574,616	+		Psyr_2214	0.61	-0.1
2,574,616	+		Psyr_2214	0.61	+2.4
2,574,616	+		Psyr_2214	0.61	-0.8
2,574,616	+		Psyr_2214	0.61	-1.4
2,574,617	-		Psyr_2214	0.62	+2.9
2,574,617	-		Psyr_2214	0.62	-1.6
2,574,617	-		Psyr_2214	0.62	-0.3
2,574,617	-		Psyr_2214	0.62	+3.7
2,574,674	-		Psyr_2214	0.64	+3.2
2,574,703	+		Psyr_2214	0.66	-2.6
2,574,703	+		Psyr_2214	0.66	+3.0
2,574,734	-		Psyr_2214	0.67	+1.4
2,574,734	-		Psyr_2214	0.67	-2.8
2,574,792	+		Psyr_2214	0.70	+3.2
2,574,793	-		Psyr_2214	0.70	+4.1
2,574,883	+		Psyr_2214	0.74	+0.9
2,574,883	+		Psyr_2214	0.74	-1.0
2,575,312	-				+2.5
2,575,375	-				+4.3
2,575,393	+				+0.4
2,575,415	+				+3.0
2,575,415	+				+3.9
2,575,480	-				-2.0
2,575,577	+				+1.5
2,575,577	+				+1.5
2,575,677	+		Psyr_2215	0.16	+2.0
2,575,677	+		Psyr_2215	0.16	+1.5
2,575,677	+		Psyr_2215	0.16	-2.7
2,575,689	+		Psyr_2215	0.17	-0.7
2,575,827	+		Psyr_2215	0.27	-1.6
2,575,828	-		Psyr_2215	0.27	-1.7
2,575,828	-		Psyr_2215	0.27	+0.3
2,575,828	-		Psyr_2215	0.27	+3.7
2,575,828	-		Psyr_2215	0.27	-0.9
2,575,828	-		Psyr_2215	0.27	-2.2
2,575,867	+		Psyr_2215	0.29	+0.4
2,575,867	+		Psyr_2215	0.29	-3.8
2,575,868	-		Psyr_2215	0.29	+1.9
2,575,868	-		Psyr_2215	0.29	+1.5
2,575,942	-		Psyr_2215	0.34	-0.7
2,575,942	-		Psyr_2215	0.34	-1.2
2,575,942	-		Psyr_2215	0.34	-2.0
2,576,364	+		Psyr_2215	0.63	+1.5
2,576,376	+		Psyr_2215	0.64	+0.9