Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2143

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,501,182	+		Psyr_2142	0.31	+3.3
2,501,183	-		Psyr_2142	0.31	-1.3
2,501,290	+		Psyr_2142	0.41	+2.9
2,501,290	+		Psyr_2142	0.41	+1.9
2,501,290	+		Psyr_2142	0.41	+1.7
2,501,290	+		Psyr_2142	0.41	-1.8
2,501,291	-		Psyr_2142	0.41	+3.3
2,501,291	-		Psyr_2142	0.41	-4.1
2,501,298	+		Psyr_2142	0.42	-1.1
2,501,298	+		Psyr_2142	0.42	-1.3
2,501,298	+		Psyr_2142	0.42	-2.1
2,501,298	+		Psyr_2142	0.42	+1.9
2,501,298	+		Psyr_2142	0.42	+2.2
2,501,298	+		Psyr_2142	0.42	-1.3
2,501,299	-		Psyr_2142	0.42	-1.4
2,501,299	-				+1.5
2,501,299	-		Psyr_2142	0.42	-1.8
2,501,299	-		Psyr_2142	0.42	+1.5
2,501,299	-		Psyr_2142	0.42	+1.9
2,501,299	-		Psyr_2142	0.42	+0.5
2,501,299	-		Psyr_2142	0.42	-2.0
2,501,437	+		Psyr_2142	0.55	-0.9
2,501,518	+		Psyr_2142	0.63	+3.8
2,501,519	-		Psyr_2142	0.63	-0.8
2,501,519	-		Psyr_2142	0.63	+1.9
2,501,519	-		Psyr_2142	0.63	+0.2
2,501,519	-		Psyr_2142	0.63	+0.6
2,501,527	+		Psyr_2142	0.64	+1.5
2,501,740	+		Psyr_2142	0.85	+2.9
2,501,740	+		Psyr_2142	0.85	+0.9
2,501,741	-		Psyr_2142	0.85	-0.5
2,501,741	-		Psyr_2142	0.85	-0.7
2,501,741	-		Psyr_2142	0.85	-1.5
2,501,908	+				+2.7
2,501,908	+				-3.8
2,501,909	-				-2.9
2,501,909	-				-5.4
2,501,909	-				+4.4
2,501,910	+				-0.7
2,501,910	+				+3.0
2,501,910	+				-1.0
2,501,910	+				+1.5
2,501,910	+				+3.0
2,501,926	+				-0.3
2,501,985	+				-1.6
2,502,044	-				+3.5
2,502,080	+				-1.7
2,502,081	-				+3.2
2,502,130	+				+3.3
2,503,049	+		Psyr_2143	0.87	-0.9
2,503,049	+		Psyr_2143	0.87	-1.2
2,503,101	+				-1.5
2,503,101	+				+3.6
2,503,102	-				-0.1
2,503,102	-				-0.5
2,503,132	-				+0.2
2,503,192	+				+2.2
2,503,192	+				+0.9
2,503,193	-				+3.2
2,503,193	-				-0.1
2,503,193	-				-1.1
2,503,229	-				+0.9
2,503,297	-				+3.8
2,503,297	-				-1.0
2,503,297	-				-1.7
2,503,332	+		Psyr_2144	0.22	-1.9
2,503,332	+		Psyr_2144	0.22	+1.5
2,503,333	-		Psyr_2144	0.23	+1.5
2,503,333	-		Psyr_2144	0.23	+4.0
2,503,459	+		Psyr_2144	0.86	+2.5
2,503,484	-				+2.9
2,503,543	-				+3.5
2,503,711	+		Psyr_2145	0.53	-1.4
2,503,923	+		Psyr_2146	0.12	-3.2
2,503,924	-		Psyr_2146	0.12	-4.1
2,503,924	-		Psyr_2146	0.12	-0.4
2,503,974	+		Psyr_2146	0.19	+1.9
2,503,974	+		Psyr_2146	0.19	+2.2
2,503,974	+		Psyr_2146	0.19	-2.0
2,503,974	+		Psyr_2146	0.19	-0.1
2,503,974	+		Psyr_2146	0.19	-0.8
2,503,974	+		Psyr_2146	0.19	+1.9
2,503,974	+		Psyr_2146	0.19	-0.5
2,503,974	+		Psyr_2146	0.19	+1.9
2,503,974	+		Psyr_2146	0.19	+0.9
2,503,975	-		Psyr_2146	0.19	+1.9
2,503,975	-		Psyr_2146	0.19	-2.4
2,503,975	-		Psyr_2146	0.19	-1.3
2,503,975	-		Psyr_2146	0.19	-1.3
2,503,975	-		Psyr_2146	0.19	-0.3
2,503,975	-		Psyr_2146	0.19	-1.0
2,503,975	-		Psyr_2146	0.19	-1.2
2,504,028	-		Psyr_2146	0.25	-0.5
2,504,028	-		Psyr_2146	0.25	+2.2
2,504,074	+		Psyr_2146	0.31	-2.1
2,504,074	+		Psyr_2146	0.31	-2.0
2,504,074	+		Psyr_2146	0.31	+4.1
2,504,075	-		Psyr_2146	0.31	+1.5
2,504,075	-		Psyr_2146	0.31	-1.0
2,504,075	-		Psyr_2146	0.31	+1.9
2,504,118	-		Psyr_2146	0.37	-2.2
2,504,165	+		Psyr_2146	0.43	+1.2
2,504,165	+		Psyr_2146	0.43	-1.1
2,504,165	+		Psyr_2146	0.43	+0.9
2,504,165	+		Psyr_2146	0.43	+3.6
2,504,166	-		Psyr_2146	0.43	-1.5
2,504,166	-		Psyr_2146	0.43	+2.2
2,504,169	+		Psyr_2146	0.43	-0.7
2,504,169	+		Psyr_2146	0.43	-0.1
2,504,169	+		Psyr_2146	0.43	-0.6
2,504,170	-		Psyr_2146	0.43	-1.0