Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2108

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,459,323	+				-1.8
2,459,323	+				-0.1
2,459,323	+				+0.3
2,459,323	+				-2.0
2,459,324	-				+0.6
2,459,324	-				-1.1
2,459,324	-				-0.6
2,459,324	-				-1.5
2,459,324	-				-1.8
2,459,324	-				-0.4
2,459,324	-				-0.2
2,459,324	-				+0.3
2,459,324	-				-4.3
2,459,418	+		Psyr_2107	0.25	+2.2
2,459,487	+		Psyr_2107	0.56	+0.9
2,459,487	+		Psyr_2107	0.56	-0.2
2,459,487	+		Psyr_2107	0.56	+1.5
2,459,488	-		Psyr_2107	0.57	-0.1
2,459,488	-		Psyr_2107	0.57	+2.2
2,459,488	-		Psyr_2107	0.57	-0.3
2,459,511	+		Psyr_2107	0.68	+2.9
2,459,511	+		Psyr_2107	0.68	-0.6
2,459,511	+		Psyr_2107	0.68	+2.8
2,459,525	+		Psyr_2107	0.74	-2.7
2,459,531	+		Psyr_2107	0.77	+3.1
2,459,568	+				+2.7
2,459,568	+				+3.7
2,459,568	+				-0.1
2,459,569	-				+3.1
2,459,569	-				-2.6
2,459,581	-				+3.6
2,459,607	+				-0.1
2,459,607	+				+3.3
2,459,607	+				+0.7
2,459,607	+				-2.3
2,459,607	+				-0.8
2,459,607	+				+0.5
2,459,607	+				-0.7
2,459,608	-				+0.1
2,459,608	-				+3.2
2,459,608	-				+3.1
2,459,608	-				+1.9
2,459,608	-				+1.9
2,459,608	-				-2.8
2,459,608	-				+1.9
2,459,610	+				-2.3
2,459,611	-				-0.6
2,459,762	+				-0.1
2,459,882	+				+3.3
2,459,883	-				-0.5
2,459,926	-				-2.9
2,459,979	+				-0.6
2,460,013	-				+0.0
2,460,013	-				+2.7
2,460,013	-				-1.1
2,460,015	+				-0.3
2,460,016	-				-0.9
2,460,163	+				+0.9
2,460,163	+				+3.9
2,460,163	+				+3.9
2,460,164	-				-2.5
2,460,164	-				+2.9
2,460,164	-				+1.5
2,460,164	-				+1.9
2,460,394	-		Psyr_2108	0.10	+1.9
2,460,743	+		Psyr_2108	0.26	-2.6
2,460,744	-		Psyr_2108	0.26	+1.5
2,461,008	-		Psyr_2108	0.37	+3.1
2,461,048	-		Psyr_2108	0.39	-4.0
2,461,158	+		Psyr_2108	0.44	-0.4
2,461,158	+		Psyr_2108	0.44	+1.5
2,461,158	+		Psyr_2108	0.44	+1.1
2,461,158	+		Psyr_2108	0.44	+3.1
2,461,159	-		Psyr_2108	0.44	+1.9
2,461,159	-		Psyr_2108	0.44	+2.9
2,461,203	-		Psyr_2108	0.46	+3.5
2,461,275	+		Psyr_2108	0.49	+3.2
2,461,578	+		Psyr_2108	0.63	+1.5
2,461,578	+		Psyr_2108	0.63	+2.5
2,461,620	+		Psyr_2108	0.64	+0.4
2,461,620	+		Psyr_2108	0.64	-1.7
2,461,620	+		Psyr_2108	0.64	-0.7
2,461,648	-		Psyr_2108	0.66	+0.9
2,461,913	+		Psyr_2108	0.77	-0.5
2,461,913	+		Psyr_2108	0.77	-1.6
2,461,960	-		Psyr_2108	0.80	+3.6
2,462,034	+		Psyr_2108	0.83	+1.9
2,462,034	+		Psyr_2108	0.83	-2.2
2,462,034	+		Psyr_2108	0.83	+2.9
2,462,034	+		Psyr_2108	0.83	-1.0
2,462,035	-		Psyr_2108	0.83	-2.7
2,462,035	-		Psyr_2108	0.83	+3.6
2,462,272	-				-0.2
2,462,272	-				+2.7
2,462,272	-				+0.3
2,462,272	-				+2.9
2,462,343	-				+2.7
2,462,414	+				-1.2
2,462,564	-				+1.9
2,462,596	-				-2.0
2,462,928	+				-1.3
2,462,929	-				-2.8
2,462,929	-				+1.5
2,462,976	+				-3.1
2,462,976	+				+4.3
2,462,977	-				+2.5
2,463,086	+				+2.2
2,463,086	+				-1.6
2,463,086	+				+3.5
2,463,087	-				+0.9
2,463,094	-				+0.3
2,463,101	+		Psyr_2109	0.10	-0.5
2,463,101	+		Psyr_2109	0.10	-1.3
2,463,101	+		Psyr_2109	0.10	+0.4
2,463,102	-		Psyr_2109	0.10	-3.6
2,463,102	-		Psyr_2109	0.10	-3.7
2,463,102	-		Psyr_2109	0.10	-2.9
2,463,232	+		Psyr_2109	0.18	-2.4
2,463,382	-		Psyr_2109	0.28	+3.9
2,463,382	-		Psyr_2109	0.28	-1.8
2,463,383	+		Psyr_2109	0.28	+0.9
2,463,383	+		Psyr_2109	0.28	-1.3
2,463,383	+		Psyr_2109	0.28	-1.4
2,463,383	+		Psyr_2109	0.28	-2.1
2,463,383	+		Psyr_2109	0.28	-0.9
2,463,383	+		Psyr_2109	0.28	+0.9
2,463,383	+		Psyr_2109	0.28	+2.9
2,463,383	+		Psyr_2109	0.28	-2.5
2,463,383	+		Psyr_2109	0.28	+1.5
2,463,383	+		Psyr_2109	0.28	-2.4
2,463,384	-		Psyr_2109	0.28	-0.6
2,463,384	-		Psyr_2109	0.28	+4.3