Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2069

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2067 and Psyr_2068 overlap by 2 nucleotidesPsyr_2068 and Psyr_2069 are separated by 56 nucleotidesPsyr_2069 and Psyr_2070 are separated by 112 nucleotides Psyr_2067: Psyr_2067 - ABC transporter, at 2,413,907 to 2,414,590 _2067 Psyr_2068: Psyr_2068 - Arylesterase, at 2,414,589 to 2,415,206 _2068 Psyr_2069: Psyr_2069 - conserved hypothetical protein, at 2,415,263 to 2,415,544 _2069 Psyr_2070: Psyr_2070 - ErfK/YbiS/YcfS/YnhG, at 2,415,657 to 2,416,622 _2070 Position (kb) 2415 2416Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2414.495 kb on + strand, within Psyr_2067at 2414.495 kb on + strand, within Psyr_2067at 2414.496 kb on - strand, within Psyr_2067at 2414.549 kb on + strandat 2414.549 kb on + strandat 2414.549 kb on + strandat 2414.578 kb on + strandat 2414.579 kb on - strandat 2414.617 kb on + strandat 2414.618 kb on - strandat 2414.618 kb on - strandat 2414.636 kb on - strandat 2414.687 kb on + strand, within Psyr_2068at 2414.688 kb on - strand, within Psyr_2068at 2414.688 kb on - strand, within Psyr_2068at 2414.688 kb on - strand, within Psyr_2068at 2414.690 kb on + strand, within Psyr_2068at 2414.690 kb on + strand, within Psyr_2068at 2414.690 kb on + strand, within Psyr_2068at 2414.691 kb on - strand, within Psyr_2068at 2414.691 kb on - strand, within Psyr_2068at 2414.853 kb on - strand, within Psyr_2068at 2414.853 kb on - strand, within Psyr_2068at 2414.980 kb on + strand, within Psyr_2068at 2415.006 kb on + strand, within Psyr_2068at 2415.018 kb on + strand, within Psyr_2068at 2415.100 kb on + strand, within Psyr_2068at 2415.100 kb on + strand, within Psyr_2068at 2415.288 kb on - strandat 2415.288 kb on - strandat 2415.288 kb on - strandat 2415.293 kb on + strand, within Psyr_2069at 2415.397 kb on + strand, within Psyr_2069at 2415.397 kb on + strand, within Psyr_2069at 2415.398 kb on - strand, within Psyr_2069at 2415.398 kb on - strand, within Psyr_2069at 2415.542 kb on + strandat 2415.542 kb on + strandat 2415.542 kb on + strandat 2415.543 kb on - strandat 2415.543 kb on - strandat 2415.543 kb on - strandat 2415.543 kb on - strandat 2415.543 kb on - strandat 2415.602 kb on + strandat 2415.603 kb on - strandat 2415.603 kb on - strandat 2415.631 kb on - strandat 2415.798 kb on + strand, within Psyr_2070at 2415.798 kb on + strand, within Psyr_2070at 2415.798 kb on + strand, within Psyr_2070at 2415.799 kb on - strand, within Psyr_2070at 2415.844 kb on - strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.984 kb on + strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.985 kb on - strand, within Psyr_2070at 2415.987 kb on + strand, within Psyr_2070at 2415.988 kb on - strand, within Psyr_2070at 2416.293 kb on + strand, within Psyr_2070at 2416.293 kb on + strand, within Psyr_2070at 2416.293 kb on + strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.302 kb on - strand, within Psyr_2070at 2416.365 kb on + strand, within Psyr_2070at 2416.365 kb on + strand, within Psyr_2070at 2416.366 kb on - strand, within Psyr_2070at 2416.366 kb on - strand, within Psyr_2070at 2416.366 kb on - strand, within Psyr_2070at 2416.395 kb on + strand, within Psyr_2070at 2416.525 kb on + strand, within Psyr_2070at 2416.525 kb on + strand, within Psyr_2070at 2416.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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2,414,495 + Psyr_2067 0.86 +3.5
2,414,495 + Psyr_2067 0.86 -0.0
2,414,496 - Psyr_2067 0.86 +0.0
2,414,549 + +1.0
2,414,549 + -0.6
2,414,549 + +1.0
2,414,578 + +3.3
2,414,579 - -0.7
2,414,617 + -0.5
2,414,618 - +0.3
2,414,618 - +2.0
2,414,636 - -1.2
2,414,687 + Psyr_2068 0.16 -1.5
2,414,688 - Psyr_2068 0.16 -0.0
2,414,688 - Psyr_2068 0.16 +1.0
2,414,688 - Psyr_2068 0.16 -1.8
2,414,690 + Psyr_2068 0.16 +1.2
2,414,690 + Psyr_2068 0.16 +1.0
2,414,690 + Psyr_2068 0.16 +2.0
2,414,691 - Psyr_2068 0.17 -0.0
2,414,691 - Psyr_2068 0.17 +4.1
2,414,853 - Psyr_2068 0.43 -2.0
2,414,853 - Psyr_2068 0.43 +1.6
2,414,980 + Psyr_2068 0.63 -0.0
2,415,006 + Psyr_2068 0.67 -1.3
2,415,018 + Psyr_2068 0.69 +2.8
2,415,100 + Psyr_2068 0.83 -2.7
2,415,100 + Psyr_2068 0.83 -0.0
2,415,288 - -1.2
2,415,288 - +1.5
2,415,288 - -0.0
2,415,293 + Psyr_2069 0.11 -3.3
2,415,397 + Psyr_2069 0.48 -1.6
2,415,397 + Psyr_2069 0.48 -0.0
2,415,398 - Psyr_2069 0.48 +2.8
2,415,398 - Psyr_2069 0.48 -2.3
2,415,542 + +1.5
2,415,542 + -1.0
2,415,542 + +3.5
2,415,543 - +0.9
2,415,543 - -0.3
2,415,543 - +1.5
2,415,543 - +0.1
2,415,543 - -0.6
2,415,602 + +1.0
2,415,603 - -1.8
2,415,603 - +3.0
2,415,631 - -0.0
2,415,798 + Psyr_2070 0.15 +3.0
2,415,798 + Psyr_2070 0.15 +1.0
2,415,798 + Psyr_2070 0.15 -1.0
2,415,799 - Psyr_2070 0.15 +3.5
2,415,844 - Psyr_2070 0.19 -0.4
2,415,984 + Psyr_2070 0.34 +1.5
2,415,984 + Psyr_2070 0.34 +1.0
2,415,984 + Psyr_2070 0.34 -0.5
2,415,984 + Psyr_2070 0.34 -2.3
2,415,984 + Psyr_2070 0.34 -1.6
2,415,984 + Psyr_2070 0.34 +3.3
2,415,984 + Psyr_2070 0.34 -2.6
2,415,984 + Psyr_2070 0.34 -1.8
2,415,984 + Psyr_2070 0.34 +2.3
2,415,984 + Psyr_2070 0.34 -2.7
2,415,984 + Psyr_2070 0.34 -2.6
2,415,984 + Psyr_2070 0.34 -0.4
2,415,984 + Psyr_2070 0.34 -1.0
2,415,984 + Psyr_2070 0.34 +2.3
2,415,984 + Psyr_2070 0.34 -0.0
2,415,984 + Psyr_2070 0.34 -0.4
2,415,984 + Psyr_2070 0.34 +2.0
2,415,984 + Psyr_2070 0.34 +0.5
2,415,984 + Psyr_2070 0.34 +2.5
2,415,984 + Psyr_2070 0.34 +0.2
2,415,984 + Psyr_2070 0.34 -0.6
2,415,984 + Psyr_2070 0.34 -0.0
2,415,984 + Psyr_2070 0.34 -0.0
2,415,984 + Psyr_2070 0.34 +2.0
2,415,985 - Psyr_2070 0.34 +2.0
2,415,985 - Psyr_2070 0.34 +3.5
2,415,985 - Psyr_2070 0.34 +2.5
2,415,985 - Psyr_2070 0.34 +3.1
2,415,985 - Psyr_2070 0.34 -1.2
2,415,985 - Psyr_2070 0.34 -0.0
2,415,985 - Psyr_2070 0.34 +2.5
2,415,985 - Psyr_2070 0.34 -3.0
2,415,985 - Psyr_2070 0.34 +2.0
2,415,985 - Psyr_2070 0.34 +3.0
2,415,985 - Psyr_2070 0.34 -0.6
2,415,985 - Psyr_2070 0.34 -0.2
2,415,985 - Psyr_2070 0.34 +3.3
2,415,985 - Psyr_2070 0.34 +3.0
2,415,985 - Psyr_2070 0.34 +3.7
2,415,985 - Psyr_2070 0.34 -1.4
2,415,985 - Psyr_2070 0.34 +0.3
2,415,985 - Psyr_2070 0.34 +1.5
2,415,985 - Psyr_2070 0.34 -1.2
2,415,985 - Psyr_2070 0.34 -0.5
2,415,985 - Psyr_2070 0.34 +2.5
2,415,985 - Psyr_2070 0.34 +3.4
2,415,985 - Psyr_2070 0.34 +0.2
2,415,985 - Psyr_2070 0.34 +1.0
2,415,985 - Psyr_2070 0.34 +3.0
2,415,985 - Psyr_2070 0.34 +4.3
2,415,985 - Psyr_2070 0.34 +3.1
2,415,987 + Psyr_2070 0.34 -1.1
2,415,988 - Psyr_2070 0.34 +1.4
2,416,293 + Psyr_2070 0.66 +3.1
2,416,293 + Psyr_2070 0.66 +3.9
2,416,293 + Psyr_2070 0.66 +2.5
2,416,294 - Psyr_2070 0.66 +2.8
2,416,294 - Psyr_2070 0.66 +3.7
2,416,294 - Psyr_2070 0.66 -1.8
2,416,294 - Psyr_2070 0.66 -1.1
2,416,294 - Psyr_2070 0.66 +1.4
2,416,302 - Psyr_2070 0.67 -0.8
2,416,365 + Psyr_2070 0.73 +3.4
2,416,365 + Psyr_2070 0.73 -1.4
2,416,366 - Psyr_2070 0.73 +3.5
2,416,366 - Psyr_2070 0.73 +3.8
2,416,366 - Psyr_2070 0.73 +1.5
2,416,395 + Psyr_2070 0.76 -0.6
2,416,525 + Psyr_2070 0.90 -2.7
2,416,525 + Psyr_2070 0.90 +1.5
2,416,526 - -4.3

Or see this region's nucleotide sequence