Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2026

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,349,653	-		Psyr_2024	0.51	+0.5
2,349,714	+		Psyr_2024	0.64	+2.6
2,349,948	-				-0.9
2,349,948	-				-0.0
2,349,948	-				-1.5
2,350,078	-		Psyr_2025	0.31	-0.0
2,350,154	-		Psyr_2025	0.48	+2.6
2,350,177	+		Psyr_2025	0.53	-0.0
2,350,177	+		Psyr_2025	0.53	+1.6
2,350,177	+		Psyr_2025	0.53	+1.0
2,350,177	+		Psyr_2025	0.53	-0.7
2,350,178	-		Psyr_2025	0.54	-1.3
2,350,266	-		Psyr_2025	0.73	-1.8
2,350,266	-		Psyr_2025	0.73	-0.4
2,350,266	-		Psyr_2025	0.73	-0.2
2,350,266	-		Psyr_2025	0.73	-2.6
2,350,266	-		Psyr_2025	0.73	-0.5
2,350,283	+		Psyr_2025	0.77	-0.0
2,350,283	+		Psyr_2025	0.77	+3.0
2,350,283	+		Psyr_2025	0.77	+1.0
2,350,283	+		Psyr_2025	0.77	-1.9
2,350,283	+		Psyr_2025	0.77	-1.8
2,350,283	+		Psyr_2025	0.77	-1.3
2,350,284	-		Psyr_2025	0.77	+3.3
2,350,284	-		Psyr_2025	0.77	-1.2
2,350,284	-		Psyr_2025	0.77	+2.0
2,350,284	-		Psyr_2025	0.77	-1.6
2,350,395	+				+3.3
2,350,395	+				+1.0
2,350,395	+				-2.9
2,350,396	-				+0.3
2,350,456	+				+0.5
2,350,456	+				+0.8
2,350,456	+				-0.9
2,350,457	-				-1.1
2,350,457	-				+3.3
2,350,458	+				-0.6
2,350,458	+				+0.2
2,350,458	+				-0.3
2,350,459	-				+1.0
2,350,459	-				-3.6
2,350,459	-				-3.8
2,350,459	-				+0.4
2,350,460	+				+0.5
2,350,460	+				-2.8
2,350,460	+				+3.3
2,350,460	+				-1.3
2,350,460	+				-0.2
2,350,460	+				-1.3
2,350,460	+				+1.3
2,350,460	+				-0.9
2,350,460	+				-2.7
2,350,461	-				+1.6
2,350,461	-				+3.4
2,350,461	-				+2.8
2,350,461	-				+1.2
2,350,461	-				+3.3
2,350,461	-				+2.3
2,350,461	-				-1.6
2,350,461	-				-1.1
2,350,493	+				-0.7
2,350,494	-				-1.2
2,350,494	-				-0.6
2,350,495	+				+4.6
2,350,685	+				+0.1
2,350,685	+				-0.8
2,350,686	-				-1.3
2,350,686	-				+2.6
2,350,719	-		Psyr_2026	0.10	-0.0
2,351,114	+		Psyr_2026	0.59	+2.0
2,351,114	+		Psyr_2026	0.59	+3.6
2,351,190	-		Psyr_2026	0.69	-0.0
2,351,324	+		Psyr_2026	0.85	-2.3
2,351,325	-		Psyr_2026	0.85	-0.6
2,351,643	+		Psyr_2027	0.24	+3.8
2,351,663	-		Psyr_2027	0.26	+0.5
2,351,663	-		Psyr_2027	0.26	-3.7
2,351,677	+		Psyr_2027	0.28	+0.7
2,351,677	+		Psyr_2027	0.28	+3.3
2,351,677	+		Psyr_2027	0.28	+1.1
2,351,677	+		Psyr_2027	0.28	-0.9
2,351,677	+				-0.0
2,351,678	-		Psyr_2027	0.28	+3.2
2,352,030	+		Psyr_2027	0.69	-1.6
2,352,030	+		Psyr_2027	0.69	+3.7
2,352,031	-		Psyr_2027	0.69	+2.6
2,352,031	-		Psyr_2027	0.69	+2.8
2,352,031	-		Psyr_2027	0.69	+0.7
2,352,071	+		Psyr_2027	0.74	-1.5
2,352,071	+		Psyr_2027	0.74	+2.0
2,352,072	-		Psyr_2027	0.74	-0.0
2,352,078	+		Psyr_2027	0.75	-0.8
2,352,078	+		Psyr_2027	0.75	+4.2
2,352,078	+		Psyr_2027	0.75	+0.4
2,352,079	-		Psyr_2027	0.75	-2.4
2,352,079	-		Psyr_2027	0.75	-0.5
2,352,079	-		Psyr_2027	0.75	-2.3
2,352,142	-		Psyr_2027	0.82	+2.4
2,352,267	+				+1.0
2,352,267	+				+3.0
2,352,268	-				+1.0
2,352,394	+				-3.6
2,352,394	+				-1.4
2,352,395	-				+0.8