Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2014

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,337,734	+				+1.6
2,337,734	+				-0.0
2,337,734	+				+3.3
2,337,735	-				-0.0
2,337,735	-				+1.0
2,337,744	+				+2.3
2,337,779	-				+3.8
2,338,122	+		Psyr_2014	0.68	+2.8
2,338,122	+		Psyr_2014	0.68	-1.6
2,338,124	+		Psyr_2014	0.68	-1.3
2,338,124	+		Psyr_2014	0.68	-1.2
2,338,125	-		Psyr_2014	0.68	+2.3
2,338,125	-		Psyr_2014	0.68	-1.9
2,338,125	-		Psyr_2014	0.68	-1.2
2,338,125	-		Psyr_2014	0.68	-2.9
2,338,314	+				+3.7
2,338,315	-				-1.6
2,338,315	-				-0.9
2,338,315	-				-1.5
2,338,315	-				-0.3
2,338,315	-				+0.4
2,338,328	+				-2.7
2,338,346	+				+2.0
2,338,389	-				-3.2
2,338,521	+				+2.0
2,338,521	+				-1.6
2,338,522	-				+2.0
2,338,522	-				+2.3
2,338,522	-				+3.0
2,338,583	+				+1.6
2,338,583	+				-0.0
2,338,701	+				-1.7
2,338,702	-				+4.9
2,338,728	+				+2.6
2,338,728	+				+2.3
2,338,728	+				-0.0
2,338,728	+				+4.1
2,338,728	+				+1.5
2,338,728	+				+1.6
2,338,729	-				+3.3
2,338,729	-				-0.0
2,338,729	-				+0.1
2,338,729	-				+2.0
2,338,729	-				-3.3
2,338,729	-				+3.8
2,338,729	-				+2.3
2,338,729	-				+3.0
2,338,729	-				+0.3
2,338,874	+		Psyr_2015	0.20	-2.4
2,338,979	+		Psyr_2015	0.28	-1.0
2,338,991	+		Psyr_2015	0.29	-1.2
2,338,991	+		Psyr_2015	0.29	+1.0
2,338,991	+		Psyr_2015	0.29	-0.4
2,338,992	-		Psyr_2015	0.29	-0.0
2,338,992	-		Psyr_2015	0.29	+0.9
2,339,187	-		Psyr_2015	0.44	-3.3