Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1956

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,238,915	-		Psyr_1955	0.45	+0.0
2,239,150	+		Psyr_1955	0.64	+1.3
2,239,273	+		Psyr_1955	0.74	+0.0
2,239,273	+		Psyr_1955	0.74	-0.9
2,239,328	-		Psyr_1955	0.78	+1.6
2,239,328	-		Psyr_1955	0.78	-0.8
2,239,665	+				-0.4
2,239,666	-				-1.8
2,239,666	-				-1.3
2,239,680	-				-1.7
2,239,815	-				+0.0
2,239,815	-				-1.0
2,240,030	+		Psyr_1956	0.14	+3.7
2,240,030	+		Psyr_1956	0.14	+4.1
2,240,030	+		Psyr_1956	0.14	-0.6
2,240,031	-		Psyr_1956	0.15	-3.9
2,240,126	+		Psyr_1956	0.24	+1.6
2,240,127	-		Psyr_1956	0.24	-1.2
2,240,171	+		Psyr_1956	0.29	-0.7
2,240,172	-		Psyr_1956	0.29	-1.2
2,240,262	-		Psyr_1956	0.38	-0.7
2,240,375	+		Psyr_1956	0.50	+2.8
2,240,375	+		Psyr_1956	0.50	+0.0
2,240,375	+		Psyr_1956	0.50	+0.0
2,240,376	-		Psyr_1956	0.50	+2.0
2,240,376	-		Psyr_1956	0.50	-0.6
2,240,383	+		Psyr_1956	0.51	-1.7
2,240,384	-		Psyr_1956	0.51	+0.5
2,240,388	-		Psyr_1956	0.51	+0.5
2,240,388	-		Psyr_1956	0.51	-1.3
2,240,422	-		Psyr_1956	0.54	-0.5
2,240,634	+		Psyr_1956	0.76	+2.3
2,240,670	-		Psyr_1956	0.80	+1.0
2,240,941	+				-0.8
2,241,187	+				+3.2
2,241,187	+				-1.6
2,241,187	+				+2.6
2,241,188	-				+2.3
2,241,188	-				+2.3
2,241,188	-				+3.5
2,241,189	+				+2.7
2,241,190	-				+2.3
2,241,190	-				+1.6
2,241,190	-				-0.5
2,241,190	-				-0.2
2,241,190	-				+1.6
2,241,190	-				+2.0
2,241,190	-				-0.7
2,241,190	-				-1.2
2,241,190	-				-1.0
2,241,190	-				+1.0
2,241,313	-				+3.0
2,241,313	-				-2.6
2,241,313	-				+3.9
2,241,340	+				-0.9
2,241,341	-				-2.3
2,241,545	-				-3.4
2,241,545	-				-0.3