Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1935

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,207,063	-				+3.0
2,207,096	-				+3.2
2,207,096	-				-3.2
2,207,168	+		Psyr_1934	0.17	+2.6
2,207,168	+		Psyr_1934	0.17	-0.9
2,207,169	-		Psyr_1934	0.18	-1.1
2,207,170	+		Psyr_1934	0.18	-3.5
2,207,172	+		Psyr_1934	0.18	+2.0
2,207,172	+		Psyr_1934	0.18	-0.0
2,207,172	+		Psyr_1934	0.18	-2.2
2,207,172	+		Psyr_1934	0.18	+0.9
2,207,172	+		Psyr_1934	0.18	-0.8
2,207,173	-		Psyr_1934	0.18	-0.0
2,207,213	+		Psyr_1934	0.25	+2.3
2,207,214	-		Psyr_1934	0.25	-5.6
2,207,215	+		Psyr_1934	0.25	-1.3
2,207,215	+		Psyr_1934	0.25	+0.9
2,207,217	+		Psyr_1934	0.25	-2.9
2,207,217	+		Psyr_1934	0.25	-0.1
2,207,299	+		Psyr_1934	0.38	+1.6
2,207,391	+		Psyr_1934	0.53	+2.8
2,207,490	-		Psyr_1934	0.68	-0.0
2,207,569	+		Psyr_1934	0.81	+1.6
2,207,570	-		Psyr_1934	0.81	-0.0
2,207,588	+		Psyr_1934	0.83	-0.4
2,207,635	+				-1.0
2,207,636	-				-4.0
2,207,738	+				+2.8
2,207,747	+				+2.8
2,207,787	+				-0.4
2,207,822	-				+3.5
2,207,849	-				+2.6
2,207,906	-				-2.5
2,207,954	-				+2.8
2,207,958	-				-0.0
2,208,051	+				-0.0
2,208,053	+				+2.3
2,208,054	-				-3.2
2,208,118	+		Psyr_1935	0.11	+1.0
2,208,131	-		Psyr_1935	0.14	-3.5
2,208,234	-		Psyr_1935	0.35	-0.0
2,208,293	+		Psyr_1935	0.47	-1.1
2,208,299	+		Psyr_1935	0.48	-1.6
2,208,301	+		Psyr_1935	0.48	-0.4
2,208,369	+		Psyr_1935	0.62	-4.0
2,208,369	+		Psyr_1935	0.62	-0.7
2,208,370	-		Psyr_1935	0.62	-0.0
2,208,373	+		Psyr_1935	0.63	-3.6
2,208,374	-		Psyr_1935	0.63	-0.0
2,208,374	-		Psyr_1935	0.63	-3.7
2,208,476	+		Psyr_1935	0.84	-2.4
2,208,476	+		Psyr_1935	0.84	-2.7
2,208,477	-		Psyr_1935	0.84	-1.7
2,208,483	-				+1.0
2,208,539	-				-1.4
2,208,556	+				-4.5
2,208,556	+				+2.0
2,208,556	+				-1.4
2,208,557	-				-3.8
2,208,587	-				-4.0
2,208,587	-				-4.4
2,208,591	+				-0.0
2,208,591	+				-3.8
2,208,591	+				-2.0
2,208,591	+				+1.0
2,208,596	+				-0.9
2,208,597	-				-2.2
2,208,608	-				+2.6
2,208,733	+				-2.2
2,208,744	+				-0.0
2,208,745	-				+2.0
2,208,745	-				-2.0
2,208,773	+				+2.8
2,208,800	+				+2.2
2,208,800	+				-2.5
2,208,800	+				-2.7
2,208,800	+				-2.3
2,208,801	-				-2.3
2,208,801	-				+2.3
2,208,801	-				-0.0
2,208,801	-				+0.6
2,208,898	+				+1.0
2,208,936	+				+2.3
2,208,936	+				+3.0
2,208,936	+				-0.9
2,208,936	+				-0.9
2,208,937	-				+2.6
2,208,968	+				-1.2
2,208,968	+				-0.7
2,208,968	+				-4.1
2,208,968	+				+1.6
2,208,968	+				-0.4
2,208,968	+				-2.0
2,208,968	+				-2.4
2,208,968	+				+3.2
2,208,968	+				-1.6
2,208,975	-				-1.9
2,208,975	-				+2.8
2,208,975	-				+2.3
2,208,975	-				+2.3
2,208,988	+				+1.6
2,208,988	+				+2.0
2,208,989	-				-0.0
2,208,989	-				-2.2
2,209,206	+		Psyr_1936	0.14	-0.3
2,209,206	+		Psyr_1936	0.14	-0.9
2,209,536	+		Psyr_1936	0.47	-1.7
2,209,536	+		Psyr_1936	0.47	-0.2