Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1930

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,203,062	+		Psyr_1929	0.52	-0.0
2,203,062	+		Psyr_1929	0.52	-0.4
2,203,073	+		Psyr_1929	0.53	+2.6
2,203,076	-		Psyr_1929	0.53	+3.8
2,203,076	-		Psyr_1929	0.53	-2.6
2,203,261	-		Psyr_1929	0.68	-2.8
2,203,309	-		Psyr_1929	0.71	+2.3
2,203,414	-		Psyr_1929	0.79	-3.0
2,203,422	-		Psyr_1929	0.80	-2.8
2,203,436	-		Psyr_1929	0.81	-1.6
2,203,439	-		Psyr_1929	0.81	-4.2
2,203,465	-		Psyr_1929	0.83	-1.1
2,203,481	-		Psyr_1929	0.85	-1.8
2,203,568	-				-2.0
2,203,572	-				+0.2
2,203,588	-				-3.1
2,203,588	-				-0.0
2,203,610	+				+3.7
2,203,611	-				+2.0
2,203,611	-				+2.3
2,203,623	+				-4.0
2,203,726	+				+2.3
2,203,855	+				-1.1
2,203,878	-				-2.5
2,203,881	-				-2.5
2,203,884	+				+1.1
2,203,893	+				+1.6
2,203,901	-				+3.1
2,203,952	+				-0.6
2,203,955	-				+2.6
2,204,039	-		Psyr_1930	0.11	-1.3
2,204,089	+		Psyr_1930	0.18	-1.8
2,204,119	+		Psyr_1930	0.22	-2.6
2,204,172	+				+1.6
2,204,173	-		Psyr_1930	0.30	-0.8
2,204,222	+		Psyr_1930	0.36	-3.9
2,204,330	-		Psyr_1930	0.51	-0.0
2,204,369	-		Psyr_1930	0.56	-0.0
2,204,455	+		Psyr_1930	0.68	-0.0
2,204,501	+		Psyr_1930	0.74	-2.8
2,204,502	-		Psyr_1930	0.74	+1.0
2,204,527	-		Psyr_1930	0.78	-4.3
2,204,689	-				+2.0
2,204,722	-				+1.0
2,204,797	-				-4.5
2,204,803	+				+0.8
2,204,803	+				-0.3
2,204,803	+				-2.0
2,204,804	-				-3.3
2,204,869	-				-2.4
2,204,881	+				+2.3
2,204,882	-				-3.0
2,204,886	+				-5.1
2,204,886	+				-2.3
2,204,886	+				-1.2
2,204,887	-				-1.4
2,204,887	-				-1.6
2,204,892	+				-0.4
2,204,981	-		Psyr_1931	0.28	-2.5
2,204,981	-		Psyr_1931	0.28	+0.2
2,205,009	+		Psyr_1931	0.36	-1.0
2,205,009	+		Psyr_1931	0.36	+0.3
2,205,009	+		Psyr_1931	0.36	+2.3
2,205,017	+		Psyr_1931	0.39	-1.2
2,205,017	+		Psyr_1931	0.39	-3.7
2,205,071	+		Psyr_1931	0.56	-0.0
2,205,072	-		Psyr_1931	0.56	+2.3
2,205,106	+		Psyr_1931	0.66	+2.8
2,205,107	-		Psyr_1931	0.67	+1.6
2,205,129	-		Psyr_1931	0.73	-0.0
2,205,138	+		Psyr_1931	0.76	-3.3
2,205,139	-		Psyr_1931	0.77	+1.6
2,205,139	-		Psyr_1931	0.77	+2.6
2,205,159	-		Psyr_1931	0.83	-2.4
2,205,325	+		Psyr_1932	0.46	+2.0
2,205,325	+		Psyr_1932	0.46	-0.5
2,205,325	+		Psyr_1932	0.46	+2.3
2,205,325	+		Psyr_1932	0.46	+2.6
2,205,326	-		Psyr_1932	0.46	+2.6
2,205,326	-		Psyr_1932	0.46	-0.0
2,205,326	-		Psyr_1932	0.46	-2.9
2,205,326	-		Psyr_1932	0.46	-1.3
2,205,326	-		Psyr_1932	0.46	-1.5
2,205,361	+		Psyr_1932	0.60	-1.7
2,205,362	-		Psyr_1932	0.61	-0.2
2,205,390	+		Psyr_1932	0.72	+2.6
2,205,391	-		Psyr_1932	0.72	-3.8
2,205,415	+		Psyr_1932	0.82	+2.0
2,205,415	+		Psyr_1932	0.82	-1.6
2,205,415	+		Psyr_1932	0.82	-1.6
2,205,415	+		Psyr_1932	0.82	-0.4
2,205,415	+		Psyr_1932	0.82	+3.6
2,205,416	-		Psyr_1932	0.82	-2.0
2,205,416	-		Psyr_1932	0.82	+0.8
2,205,416	-		Psyr_1932	0.82	+3.4
2,205,416	-		Psyr_1932	0.82	-1.3
2,205,416	-		Psyr_1932	0.82	-0.6
2,205,416	-		Psyr_1932	0.82	-0.7
2,205,416	-		Psyr_1932	0.82	-3.3
2,205,416	-		Psyr_1932	0.82	-1.7
2,205,424	+		Psyr_1932	0.86	+3.4
2,205,499	+				-1.5
2,205,499	+				+0.4
2,205,499	+				+2.8
2,205,500	-				-1.6
2,205,500	-				-4.7
2,205,500	-				-0.3
2,205,500	-				-0.1
2,205,500	-				-2.5
2,205,500	-				-1.0
2,205,500	-				+3.0
2,205,500	-				+3.2
2,205,500	-				-2.6
2,205,502	+				+3.4
2,205,502	+				+5.0
2,205,502	+				+2.8
2,205,502	+				+1.6
2,205,502	+				-0.6
2,205,502	+				+3.6
2,205,502	+				-4.2
2,205,502	+				+2.3
2,205,502	+				+1.0
2,205,502	+				+0.1
2,205,502	+				-2.3
2,205,502	+				+2.0
2,205,502	+				+2.3
2,205,502	+				+4.0
2,205,503	-				+3.6
2,205,503	-				+2.0
2,205,503	-				-1.8
2,205,503	-				-2.5
2,205,503	-				-0.2
2,205,503	-				-1.5
2,205,503	-				-0.7
2,205,503	-				+3.9
2,205,503	-				-1.4
2,205,503	-				-1.0
2,205,503	-				+3.2
2,205,503	-				+0.5
2,205,503	-				+3.4
2,205,503	-				+3.7
2,205,509	-				+2.8
2,205,590	-				+1.6
2,205,593	+				-0.0
2,205,593	+				-1.0
2,205,594	-				-3.3
2,205,594	-				-1.1
2,205,594	-				-1.0
2,205,594	-				+1.0
2,205,599	+				+2.0
2,205,599	+				+3.4
2,205,600	-				-0.2
2,205,600	-				-1.8