Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1929

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,201,402	+		Psyr_1928	0.62	+2.3
2,201,403	-		Psyr_1928	0.63	-0.8
2,201,403	-		Psyr_1928	0.63	-0.9
2,201,403	-		Psyr_1928	0.63	-3.2
2,201,403	-		Psyr_1928	0.63	+2.8
2,201,403	-		Psyr_1928	0.63	+1.0
2,201,457	-		Psyr_1928	0.68	-2.3
2,201,457	-		Psyr_1928	0.68	-0.4
2,201,457	-		Psyr_1928	0.68	-3.9
2,201,457	-		Psyr_1928	0.68	+2.6
2,201,510	+		Psyr_1928	0.74	-4.1
2,201,510	+		Psyr_1928	0.74	-1.0
2,201,511	-		Psyr_1928	0.74	-2.9
2,201,511	-		Psyr_1928	0.74	-0.3
2,201,511	-		Psyr_1928	0.74	-0.4
2,201,531	+		Psyr_1928	0.76	-0.0
2,201,556	+		Psyr_1928	0.79	+1.0
2,201,556	+		Psyr_1928	0.79	+1.1
2,201,651	+		Psyr_1928	0.89	+1.6
2,201,651	+		Psyr_1928	0.89	-0.0
2,201,785	+				-1.8
2,201,785	+				+3.1
2,201,785	+				+0.6
2,201,786	-				-2.2
2,201,786	-				-2.2
2,201,786	-				-1.4
2,201,880	-				-1.9
2,202,024	-				-2.3
2,202,106	-				-2.6
2,202,106	-				-0.4
2,202,160	-				+3.8
2,202,174	+				-4.8
2,202,174	+				-3.3
2,202,174	+				+2.0
2,202,224	+				+1.0
2,202,321	-				-2.3
2,202,336	-				+1.0
2,202,356	+				-0.0
2,202,378	-				+1.2
2,202,378	-				+3.4
2,202,378	-				+1.0
2,202,392	-				+3.0
2,202,474	+				+3.1
2,202,670	-		Psyr_1929	0.22	+2.0
2,202,811	-		Psyr_1929	0.33	+3.3
2,202,901	+		Psyr_1929	0.40	+2.6
2,202,901	+		Psyr_1929	0.40	-0.0
2,202,902	-		Psyr_1929	0.40	+2.3
2,202,912	+		Psyr_1929	0.40	-1.2
2,203,062	+		Psyr_1929	0.52	-0.0
2,203,062	+		Psyr_1929	0.52	-0.4
2,203,073	+		Psyr_1929	0.53	+2.6
2,203,076	-		Psyr_1929	0.53	+3.8
2,203,076	-		Psyr_1929	0.53	-2.6
2,203,261	-		Psyr_1929	0.68	-2.8
2,203,309	-		Psyr_1929	0.71	+2.3
2,203,414	-		Psyr_1929	0.79	-3.0
2,203,422	-		Psyr_1929	0.80	-2.8
2,203,436	-		Psyr_1929	0.81	-1.6
2,203,439	-		Psyr_1929	0.81	-4.2
2,203,465	-		Psyr_1929	0.83	-1.1
2,203,481	-		Psyr_1929	0.85	-1.8
2,203,568	-				-2.0
2,203,572	-				+0.2
2,203,588	-				-3.1
2,203,588	-				-0.0
2,203,610	+				+3.7
2,203,611	-				+2.0
2,203,611	-				+2.3
2,203,623	+				-4.0
2,203,726	+				+2.3
2,203,855	+				-1.1
2,203,878	-				-2.5
2,203,881	-				-2.5
2,203,884	+				+1.1
2,203,893	+				+1.6
2,203,901	-				+3.1
2,203,952	+				-0.6
2,203,955	-				+2.6
2,204,039	-		Psyr_1930	0.11	-1.3
2,204,089	+		Psyr_1930	0.18	-1.8
2,204,119	+		Psyr_1930	0.22	-2.6
2,204,172	+				+1.6
2,204,173	-		Psyr_1930	0.30	-0.8
2,204,222	+		Psyr_1930	0.36	-3.9
2,204,330	-		Psyr_1930	0.51	-0.0
2,204,369	-		Psyr_1930	0.56	-0.0
2,204,455	+		Psyr_1930	0.68	-0.0
2,204,501	+		Psyr_1930	0.74	-2.8
2,204,502	-		Psyr_1930	0.74	+1.0
2,204,527	-		Psyr_1930	0.78	-4.3