Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1760

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,000,327	+		Psyr_1759	0.53	+2.5
2,000,327	+		Psyr_1759	0.53	-1.6
2,000,327	+		Psyr_1759	0.53	-0.0
2,000,327	+		Psyr_1759	0.53	+3.3
2,000,327	+		Psyr_1759	0.53	-0.8
2,000,327	+		Psyr_1759	0.53	+2.5
2,000,327	+		Psyr_1759	0.53	+3.0
2,000,327	+		Psyr_1759	0.53	-1.8
2,000,327	+		Psyr_1759	0.53	+2.0
2,000,327	+		Psyr_1759	0.53	-0.0
2,000,328	-		Psyr_1759	0.53	-1.5
2,000,328	-		Psyr_1759	0.53	-2.1
2,000,328	-		Psyr_1759	0.53	-1.3
2,000,328	-		Psyr_1759	0.53	+4.0
2,000,328	-		Psyr_1759	0.53	-0.7
2,000,328	-		Psyr_1759	0.53	-0.7
2,000,328	-		Psyr_1759	0.53	-0.9
2,000,328	-		Psyr_1759	0.53	-1.2
2,000,381	+		Psyr_1759	0.56	+2.8
2,000,412	-		Psyr_1759	0.58	-0.9
2,000,886	-		Psyr_1759	0.84	+2.5
2,000,934	-		Psyr_1759	0.86	-0.6
2,001,181	+				-0.9
2,001,181	+				-1.6
2,001,182	-				+1.5
2,001,436	+				+2.0
2,001,436	+				-0.3
2,001,436	+				+2.3
2,001,437	-				-1.2
2,001,437	-				+2.5
2,001,437	-				-0.8
2,001,463	+				+2.5
2,001,463	+				+3.1
2,001,463	+				-0.3
2,001,464	-				+0.0
2,001,464	-				+0.4
2,001,676	+		Psyr_1760	0.22	+1.5
2,001,676	+		Psyr_1760	0.22	+2.5
2,001,676	+		Psyr_1760	0.22	+3.3
2,001,677	-		Psyr_1760	0.22	+1.5
2,001,677	-		Psyr_1760	0.22	+0.8
2,002,003	+		Psyr_1760	0.42	-0.0
2,002,004	-		Psyr_1760	0.42	-1.3
2,002,103	-		Psyr_1760	0.49	+1.4
2,002,103	-		Psyr_1760	0.49	-0.0
2,002,103	-		Psyr_1760	0.49	+2.8
2,002,103	-		Psyr_1760	0.49	+1.5
2,002,138	+		Psyr_1760	0.51	-0.3
2,002,138	+		Psyr_1760	0.51	+2.5
2,002,138	+		Psyr_1760	0.51	-1.3
2,002,155	+		Psyr_1760	0.52	-0.6
2,002,155	+		Psyr_1760	0.52	-2.0
2,002,155	+		Psyr_1760	0.52	+4.0
2,002,155	+		Psyr_1760	0.52	-0.9
2,002,155	+		Psyr_1760	0.52	-0.0
2,002,155	+		Psyr_1760	0.52	-1.9
2,002,156	-		Psyr_1760	0.52	+2.8
2,002,156	-		Psyr_1760	0.52	-3.8
2,002,156	-		Psyr_1760	0.52	-1.0
2,002,156	-		Psyr_1760	0.52	-1.4
2,002,156	-		Psyr_1760	0.52	-5.0
2,002,156	-		Psyr_1760	0.52	+3.0
2,002,189	+		Psyr_1760	0.54	+3.0
2,002,190	-		Psyr_1760	0.54	-2.2
2,002,190	-		Psyr_1760	0.54	-1.4
2,002,294	+		Psyr_1760	0.60	+1.5
2,002,294	+		Psyr_1760	0.60	-1.2
2,002,295	-		Psyr_1760	0.60	-0.0
2,002,295	-		Psyr_1760	0.60	-0.0
2,002,295	-		Psyr_1760	0.60	+1.5
2,002,400	-		Psyr_1760	0.67	-2.7
2,002,426	+		Psyr_1760	0.69	-2.6
2,002,495	+		Psyr_1760	0.73	-1.3
2,002,567	+		Psyr_1760	0.77	+3.4
2,002,567	+		Psyr_1760	0.77	-0.9
2,002,567	+		Psyr_1760	0.77	+1.1
2,002,568	-		Psyr_1760	0.78	-1.4
2,002,568	-		Psyr_1760	0.78	+1.5
2,002,568	-		Psyr_1760	0.78	+1.0
2,002,568	-		Psyr_1760	0.78	+2.5
2,002,568	-		Psyr_1760	0.78	-1.0
2,002,568	-		Psyr_1760	0.78	-3.4
2,002,568	-		Psyr_1760	0.78	-2.0
2,002,568	-		Psyr_1760	0.78	+2.0
2,002,568	-		Psyr_1760	0.78	-0.9
2,002,568	-		Psyr_1760	0.78	+2.0
2,002,568	-		Psyr_1760	0.78	+4.0
2,002,568	-		Psyr_1760	0.78	-0.7
2,002,568	-		Psyr_1760	0.78	+3.0
2,002,568	-		Psyr_1760	0.78	+2.5
2,002,576	+		Psyr_1760	0.78	+2.5
2,002,576	+		Psyr_1760	0.78	-3.5
2,002,576	+				+1.0
2,002,577	-		Psyr_1760	0.78	-1.0
2,002,577	-		Psyr_1760	0.78	+2.8
2,002,577	-		Psyr_1760	0.78	+2.3
2,002,916	+				-4.1
2,002,917	-				+2.0
2,002,940	+				+2.5
2,002,940	+				+0.0
2,002,941	-				-2.6
2,002,969	+				+3.7
2,002,969	+				+0.4
2,002,969	+				-2.2
2,002,970	-				-2.6
2,003,036	+				-1.0
2,003,036	+				-0.4
2,003,037	-				-3.0
2,003,291	-		Psyr_1761	0.34	+3.4
2,003,291	-		Psyr_1761	0.34	+1.7
2,003,305	+		Psyr_1761	0.36	+2.3
2,003,305	+		Psyr_1761	0.36	-0.8
2,003,305	+		Psyr_1761	0.36	+2.3
2,003,305	+		Psyr_1761	0.36	-0.0
2,003,449	+		Psyr_1761	0.54	+3.1
2,003,449	+		Psyr_1761	0.54	+1.2
2,003,449	+		Psyr_1761	0.54	+1.5
2,003,450	-		Psyr_1761	0.54	-3.3
2,003,450	-		Psyr_1761	0.54	-0.9
2,003,754	+				+2.8
2,003,755	-				-0.6
2,003,763	+				-0.6
2,003,763	+				+3.1
2,003,763	+				-1.9
2,003,763	+				-0.2
2,003,763	+				-2.4
2,003,763	+				-0.0
2,003,763	+				-1.3
2,003,763	+				+2.3
2,003,763	+				+2.8
2,003,763	+				+1.8
2,003,763	+				+2.0
2,003,763	+				+1.5
2,003,763	+				+1.0
2,003,763	+				-1.6
2,003,763	+				+2.0
2,003,763	+				+0.3
2,003,763	+				+2.3
2,003,763	+				+3.4
2,003,764	-				+0.3
2,003,764	-				+3.9
2,003,764	-				-2.6
2,003,764	-				+3.3
2,003,764	-				+0.7
2,003,764	-				+3.3
2,003,767	+				+2.3
2,003,767	+				-3.2
2,003,767	+				+0.3
2,003,767	+				-2.0
2,003,767	+				-0.4
2,003,767	+				-1.6
2,003,767	+				-1.7
2,003,767	+				+1.5
2,003,767	+				+3.1
2,003,767	+				+0.2
2,003,767	+				+3.8
2,003,767	+				-2.2
2,003,767	+				-1.6
2,003,767	+				-1.5
2,003,767	+				+4.1
2,003,767	+				-0.0
2,003,767	+				+1.5
2,003,767	+				-0.5
2,003,767	+				-1.0
2,003,767	+				-1.8
2,003,767	+				-2.4
2,003,767	+				-1.0
2,003,767	+				+2.3
2,003,767	+				-1.5
2,003,768	-				-0.7
2,003,768	-				-0.6
2,003,768	-				+2.8
2,003,768	-				+2.8
2,003,768	-				-0.2
2,003,768	-				+4.0
2,003,768	-				-0.0
2,003,768	-				-1.7
2,003,768	-				+2.5
2,003,768	-				+1.4
2,003,768	-				+2.5
2,003,768	-				+0.4
2,003,768	-				+0.2
2,003,768	-				-1.3
2,003,768	-				+3.1
2,003,768	-				+2.0
2,003,768	-				+3.8
2,003,768	-				+2.3
2,003,768	-				-2.4
2,003,768	-				+0.5
2,003,768	-				+3.3
2,003,802	+				-1.7
2,003,844	+				+1.1
2,003,845	-				-0.0
2,003,845	-				-0.8
2,003,845	-				-0.0
2,003,863	-				-1.9