Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1751

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,989,256	+				-1.2
1,989,352	+				-1.6
1,989,406	+				-0.6
1,989,406	+				+1.5
1,989,416	+				-0.7
1,989,416	+				-2.4
1,989,459	+				+3.3
1,989,461	+				-4.2
1,989,461	+				+3.9
1,989,551	+				+1.5
1,989,561	+				+1.5
1,989,709	-		Psyr_1750	0.53	+1.5
1,989,835	+				+1.0
1,989,982	+				+0.4
1,989,982	+				-1.4
1,990,021	+				-0.8
1,990,021	+				-2.0
1,990,021	+				+1.4
1,990,021	+				+3.3
1,990,022	-				-2.6
1,990,055	-				-2.9
1,990,482	+		Psyr_1751	0.23	+2.3
1,990,483	-		Psyr_1751	0.23	-2.1
1,990,483	-		Psyr_1751	0.23	-3.4
1,990,487	+		Psyr_1751	0.24	-0.9
1,990,695	-		Psyr_1751	0.35	-3.5
1,990,745	+		Psyr_1751	0.37	-2.2
1,991,036	+		Psyr_1751	0.53	+1.5
1,991,037	-		Psyr_1751	0.53	-0.0
1,991,037	-		Psyr_1751	0.53	-0.0
1,991,037	-		Psyr_1751	0.53	+1.0
1,991,063	+		Psyr_1751	0.54	+1.0
1,991,063	+		Psyr_1751	0.54	-2.9
1,991,064	-		Psyr_1751	0.54	-0.0
1,991,064	-		Psyr_1751	0.54	-3.6
1,991,064	-		Psyr_1751	0.54	-0.0
1,991,064	-		Psyr_1751	0.54	-4.1
1,991,419	+		Psyr_1751	0.73	+1.5
1,991,722	+		Psyr_1751	0.89	-2.0
1,991,883	-				+2.5
1,991,925	-				+3.3
1,991,996	+				-1.8
1,991,996	+				+4.4
1,991,997	-				+0.3
1,991,997	-				+3.7
1,991,997	-				+0.2
1,992,000	+				-0.0
1,992,000	+				-0.5
1,992,001	-				+0.7
1,992,001	-				-2.1
1,992,001	-				-4.7
1,992,001	-				-0.8
1,992,001	-				+4.0
1,992,014	+				+2.3
1,992,014	+				-1.8
1,992,015	-				-2.2
1,992,100	-		Psyr_1752	0.20	+1.0
1,992,171	+		Psyr_1752	0.41	+1.2
1,992,172	-		Psyr_1752	0.42	-0.0
1,992,175	+		Psyr_1752	0.42	+3.8
1,992,175	+		Psyr_1752	0.42	-1.2
1,992,175	+		Psyr_1752	0.42	-1.0
1,992,175	+		Psyr_1752	0.42	-3.1
1,992,176	-		Psyr_1752	0.43	-2.2
1,992,176	-		Psyr_1752	0.43	+3.0
1,992,176	-		Psyr_1752	0.43	-0.2
1,992,176	-		Psyr_1752	0.43	+3.3
1,992,176	-		Psyr_1752	0.43	+3.7
1,992,176	-		Psyr_1752	0.43	-1.3
1,992,305	-		Psyr_1752	0.81	-1.0
1,992,339	+				+3.1
1,992,339	+				+0.2
1,992,339	+				-1.5
1,992,339	+				+0.5
1,992,339	+				-2.3
1,992,339	+				+3.4
1,992,339	+				-1.2
1,992,340	-				-1.0
1,992,340	-				+2.8
1,992,340	-				-0.8
1,992,340	-				+2.8
1,992,340	-				+2.5
1,992,341	+				-0.5
1,992,341	+				+3.0
1,992,341	+				+1.5
1,992,341	+				+1.5
1,992,341	+				-0.5
1,992,341	+				+3.3
1,992,341	+				-1.9
1,992,341	+				+2.8
1,992,342	-				+3.4
1,992,342	-				+0.3
1,992,342	-				+2.3
1,992,342	-				+2.4
1,992,342	-				-2.1
1,992,342	-				+3.9
1,992,342	-				-1.3
1,992,342	-				-1.4
1,992,342	-				+4.1
1,992,342	-				-1.4
1,992,342	-				+0.2
1,992,371	+				-0.3
1,992,372	-				+4.3
1,992,436	-				-0.4
1,992,455	+				+2.0
1,992,456	-				+3.7
1,992,456	-				+3.8
1,992,456	-				+3.9
1,992,483	+		Psyr_1753	0.10	-0.6
1,992,621	+		Psyr_1753	0.52	+1.0
1,992,621	+		Psyr_1753	0.52	-0.0
1,992,622	-		Psyr_1753	0.53	+3.1
1,992,622	-		Psyr_1753	0.53	-1.8
1,992,622	-		Psyr_1753	0.53	-0.2
1,992,627	+		Psyr_1753	0.54	+3.1
1,992,627	+		Psyr_1753	0.54	-0.7
1,992,627	+		Psyr_1753	0.54	+0.9
1,992,627	+		Psyr_1753	0.54	-0.1
1,992,628	-		Psyr_1753	0.54	+1.5
1,992,629	+		Psyr_1753	0.55	+1.0
1,992,629	+		Psyr_1753	0.55	-0.5
1,992,629	+		Psyr_1753	0.55	-0.7
1,992,630	-		Psyr_1753	0.55	+2.8
1,992,630	-		Psyr_1753	0.55	-0.3
1,992,682	+		Psyr_1753	0.71	-0.4
1,992,682	+		Psyr_1753	0.71	+1.7
1,992,682	+		Psyr_1753	0.71	-0.6
1,992,683	-		Psyr_1753	0.71	+2.5
1,992,683	-		Psyr_1753	0.71	-1.4
1,992,683	-		Psyr_1753	0.71	+3.3
1,992,690	-		Psyr_1753	0.73	-0.5
1,992,830	+				+3.8