Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1725

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,957,293	+		Psyr_1724	0.86	+0.7
1,957,294	-		Psyr_1724	0.86	-2.1
1,957,509	+				-1.1
1,957,510	-				-1.0
1,957,510	-				+2.8
1,957,510	-				+1.0
1,957,557	-				+2.0
1,957,569	+				-0.9
1,957,569	+				-0.7
1,957,570	-				+2.5
1,957,570	-				+3.1
1,957,570	-				-0.1
1,957,570	-				+1.0
1,957,570	-				+3.1
1,957,571	+				+3.0
1,957,571	+				+3.1
1,957,572	-				-0.0
1,957,572	-				+2.0
1,957,638	+				+1.0
1,957,638	+				-1.6
1,957,638	+				-0.2
1,957,667	+				-1.9
1,957,920	+				-1.4
1,957,920	+				+2.3
1,957,920	+				-0.7
1,957,920	+				+3.0
1,957,920	+				-2.4
1,957,920	+				+0.4
1,957,920	+				+2.0
1,957,920	+				+3.7
1,957,921	-				+0.2
1,957,921	-				+1.5
1,957,921	-				-1.9
1,957,921	-				-3.9
1,957,921	-				+2.4
1,957,921	-				-0.0
1,957,921	-				+1.5
1,957,981	-				-4.1
1,957,992	-				+1.4
1,957,992	-				+1.0
1,958,006	+				+3.8
1,958,052	+				+1.0
1,958,052	+				+0.6
1,958,052	+				+3.3
1,958,052	+				+1.5
1,958,246	-		Psyr_1725	0.33	-1.0
1,958,270	+		Psyr_1725	0.37	+3.3
1,958,386	-		Psyr_1725	0.59	+3.8
1,958,517	-		Psyr_1725	0.83	-2.0
1,958,517	-		Psyr_1725	0.83	+1.5
1,958,517	-		Psyr_1725	0.83	+4.0
1,958,554	+				+2.5
1,958,554	+				-0.3
1,958,555	-				+1.3
1,958,645	+				-1.4
1,958,646	-				+1.0
1,958,647	+				+3.8
1,958,822	+				+3.0
1,958,822	+				-2.6
1,958,823	-				-2.2
1,958,823	-				+1.0
1,958,824	+				+3.0
1,958,825	-				-1.6
1,958,845	+				+4.2
1,958,845	+				-2.6
1,958,845	+				-0.8
1,958,845	+				-0.7
1,958,845	+				+2.0
1,958,846	-				-1.5
1,958,846	-				-2.4
1,958,846	-				-1.2
1,958,846	-				-0.9
1,958,847	+				+4.0
1,958,847	+				+3.7
1,958,847	+				-0.0
1,958,848	-				-0.0
1,958,851	+				-1.0
1,958,851	+				+1.0
1,958,851	+				+3.3
1,958,852	-				-1.6
1,958,852	-				-0.3
1,958,852	-				+1.4
1,958,852	-				+3.1
1,958,917	+				+3.1
1,958,918	-				-3.2
1,958,921	+				-0.0
1,958,921	+				-0.0
1,958,922	-				-1.5
1,958,922	-				+1.5
1,959,000	-				-0.0