Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1719

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1718 and Psyr_1719 overlap by 8 nucleotidesPsyr_1719 and Psyr_1720 overlap by 4 nucleotidesPsyr_1720 and Psyr_1721 are separated by 4 nucleotides Psyr_1718: Psyr_1718 - von Willebrand factor, type A, at 1,947,945 to 1,949,003 _1718 Psyr_1719: Psyr_1719 - conserved hypothetical protein, at 1,948,996 to 1,949,490 _1719 Psyr_1720: Psyr_1720 - Protein of unknown function DUF58, at 1,949,487 to 1,950,431 _1720 Psyr_1721: Psyr_1721 - moxR protein, putative, at 1,950,436 to 1,951,395 _1721 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1948.093 kb on + strand, within Psyr_1718at 1948.201 kb on + strand, within Psyr_1718at 1948.202 kb on - strand, within Psyr_1718at 1948.439 kb on + strand, within Psyr_1718at 1948.547 kb on - strand, within Psyr_1718at 1948.547 kb on - strand, within Psyr_1718at 1949.078 kb on + strand, within Psyr_1719at 1949.155 kb on - strand, within Psyr_1719at 1949.170 kb on - strand, within Psyr_1719at 1949.262 kb on - strand, within Psyr_1719at 1949.521 kb on + strandat 1949.996 kb on - strand, within Psyr_1720at 1949.996 kb on - strand, within Psyr_1720at 1950.200 kb on + strand, within Psyr_1720at 1950.201 kb on - strand, within Psyr_1720at 1950.250 kb on + strand, within Psyr_1720at 1950.251 kb on - strand, within Psyr_1720

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,948,093 + Psyr_1718 0.14 -0.8
1,948,201 + Psyr_1718 0.24 -0.0
1,948,202 - Psyr_1718 0.24 -0.9
1,948,439 + Psyr_1718 0.47 -1.9
1,948,547 - Psyr_1718 0.57 -1.6
1,948,547 - Psyr_1718 0.57 -0.0
1,949,078 + Psyr_1719 0.17 -0.0
1,949,155 - Psyr_1719 0.32 -3.0
1,949,170 - Psyr_1719 0.35 -4.2
1,949,262 - Psyr_1719 0.54 -3.3
1,949,521 + -1.6
1,949,996 - Psyr_1720 0.54 -1.4
1,949,996 - Psyr_1720 0.54 +1.0
1,950,200 + Psyr_1720 0.75 +1.5
1,950,201 - Psyr_1720 0.76 -1.1
1,950,250 + Psyr_1720 0.81 +2.8
1,950,251 - Psyr_1720 0.81 -0.5

Or see this region's nucleotide sequence