Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1712

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1710 and Psyr_1711 are separated by 126 nucleotidesPsyr_1711 and Psyr_1712 are separated by 66 nucleotidesPsyr_1712 and Psyr_1713 are separated by 422 nucleotidesPsyr_1713 and Psyr_1714 are separated by 108 nucleotides Psyr_1710: Psyr_1710 - Protein of unknown function DUF1238, at 1,936,183 to 1,937,175 _1710 Psyr_1711: Psyr_1711 - conserved hypothetical protein, at 1,937,302 to 1,937,598 _1711 Psyr_1712: Psyr_1712 - conserved hypothetical protein, at 1,937,665 to 1,938,849 _1712 Psyr_1713: Psyr_1713 - hypothetical protein, at 1,939,272 to 1,939,538 _1713 Psyr_1714: Psyr_1714 - exonuclease SbcC, at 1,939,647 to 1,943,291 _1714 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1936.699 kb on + strand, within Psyr_1710at 1936.699 kb on + strand, within Psyr_1710at 1936.699 kb on + strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.757 kb on - strand, within Psyr_1710at 1936.757 kb on - strand, within Psyr_1710at 1936.786 kb on + strand, within Psyr_1710at 1936.787 kb on - strand, within Psyr_1710at 1936.787 kb on - strand, within Psyr_1710at 1936.787 kb on - strand, within Psyr_1710at 1936.787 kb on - strandat 1936.787 kb on - strand, within Psyr_1710at 1936.792 kb on + strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1937.173 kb on + strandat 1937.174 kb on - strandat 1937.231 kb on - strandat 1937.239 kb on - strandat 1937.255 kb on + strandat 1937.255 kb on + strandat 1937.256 kb on - strandat 1937.256 kb on - strandat 1937.316 kb on + strandat 1937.316 kb on + strandat 1937.316 kb on + strandat 1937.448 kb on - strand, within Psyr_1711at 1937.600 kb on + strandat 1937.600 kb on + strandat 1937.601 kb on - strandat 1937.601 kb on - strandat 1937.622 kb on + strandat 1937.622 kb on + strandat 1937.622 kb on + strandat 1937.668 kb on + strandat 1937.686 kb on - strandat 1937.757 kb on + strandat 1937.758 kb on - strandat 1937.806 kb on + strand, within Psyr_1712at 1937.807 kb on - strand, within Psyr_1712at 1937.807 kb on - strand, within Psyr_1712at 1937.807 kb on - strand, within Psyr_1712at 1937.807 kb on - strand, within Psyr_1712at 1938.062 kb on - strand, within Psyr_1712at 1938.092 kb on - strand, within Psyr_1712at 1938.098 kb on + strand, within Psyr_1712at 1938.262 kb on + strand, within Psyr_1712at 1938.262 kb on + strand, within Psyr_1712at 1938.262 kb on + strand, within Psyr_1712at 1938.262 kb on + strand, within Psyr_1712at 1938.262 kb on + strand, within Psyr_1712at 1938.263 kb on - strand, within Psyr_1712at 1938.263 kb on - strand, within Psyr_1712at 1938.263 kb on - strand, within Psyr_1712at 1938.263 kb on - strand, within Psyr_1712at 1938.266 kb on + strand, within Psyr_1712at 1938.310 kb on + strand, within Psyr_1712at 1938.390 kb on + strand, within Psyr_1712at 1938.391 kb on - strand, within Psyr_1712at 1938.391 kb on - strand, within Psyr_1712at 1938.464 kb on - strand, within Psyr_1712at 1938.574 kb on + strand, within Psyr_1712at 1938.578 kb on + strand, within Psyr_1712at 1938.579 kb on - strand, within Psyr_1712at 1938.579 kb on - strand, within Psyr_1712at 1938.823 kb on + strandat 1938.824 kb on - strandat 1938.824 kb on - strandat 1938.843 kb on + strandat 1938.875 kb on + strandat 1938.915 kb on + strandat 1938.921 kb on + strandat 1938.998 kb on + strandat 1938.999 kb on - strandat 1939.063 kb on + strandat 1939.064 kb on - strandat 1939.139 kb on + strandat 1939.139 kb on + strandat 1939.139 kb on + strandat 1939.140 kb on - strandat 1939.140 kb on - strandat 1939.151 kb on + strandat 1939.152 kb on - strandat 1939.152 kb on - strandat 1939.263 kb on + strandat 1939.264 kb on - strandat 1939.401 kb on - strand, within Psyr_1713

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,936,699 + Psyr_1710 0.52 +2.8
1,936,699 + Psyr_1710 0.52 -0.6
1,936,699 + Psyr_1710 0.52 -1.2
1,936,700 - Psyr_1710 0.52 +0.3
1,936,700 - Psyr_1710 0.52 -0.0
1,936,700 - Psyr_1710 0.52 +3.1
1,936,700 - Psyr_1710 0.52 -0.9
1,936,700 - Psyr_1710 0.52 +2.0
1,936,757 - Psyr_1710 0.58 +2.0
1,936,757 - Psyr_1710 0.58 +3.1
1,936,786 + Psyr_1710 0.61 +4.3
1,936,787 - Psyr_1710 0.61 +3.1
1,936,787 - Psyr_1710 0.61 +1.6
1,936,787 - Psyr_1710 0.61 -0.8
1,936,787 - +2.3
1,936,787 - Psyr_1710 0.61 -0.3
1,936,792 + Psyr_1710 0.61 +0.5
1,936,793 - Psyr_1710 0.61 +2.0
1,936,793 - Psyr_1710 0.61 +3.7
1,936,793 - Psyr_1710 0.61 -0.2
1,936,793 - Psyr_1710 0.61 +2.8
1,936,793 - Psyr_1710 0.61 -1.4
1,937,173 + -0.9
1,937,174 - -1.7
1,937,231 - -2.1
1,937,239 - -1.9
1,937,255 + -1.1
1,937,255 + +2.8
1,937,256 - -0.9
1,937,256 - -1.2
1,937,316 + -1.0
1,937,316 + +2.6
1,937,316 + +3.3
1,937,448 - Psyr_1711 0.49 -0.1
1,937,600 + -1.5
1,937,600 + -0.0
1,937,601 - -0.0
1,937,601 - -2.4
1,937,622 + -0.0
1,937,622 + -2.0
1,937,622 + -1.5
1,937,668 + -0.0
1,937,686 - +0.5
1,937,757 + +0.2
1,937,758 - +0.5
1,937,806 + Psyr_1712 0.12 -0.5
1,937,807 - Psyr_1712 0.12 +3.1
1,937,807 - Psyr_1712 0.12 -0.0
1,937,807 - Psyr_1712 0.12 -1.1
1,937,807 - Psyr_1712 0.12 +0.7
1,938,062 - Psyr_1712 0.34 +2.3
1,938,092 - Psyr_1712 0.36 -0.2
1,938,098 + Psyr_1712 0.37 -1.3
1,938,262 + Psyr_1712 0.50 -2.5
1,938,262 + Psyr_1712 0.50 +0.8
1,938,262 + Psyr_1712 0.50 +0.9
1,938,262 + Psyr_1712 0.50 +3.4
1,938,262 + Psyr_1712 0.50 +2.0
1,938,263 - Psyr_1712 0.50 -0.6
1,938,263 - Psyr_1712 0.50 -2.4
1,938,263 - Psyr_1712 0.50 -1.1
1,938,263 - Psyr_1712 0.50 +2.3
1,938,266 + Psyr_1712 0.51 -2.4
1,938,310 + Psyr_1712 0.54 -1.1
1,938,390 + Psyr_1712 0.61 +1.5
1,938,391 - Psyr_1712 0.61 +4.2
1,938,391 - Psyr_1712 0.61 -1.3
1,938,464 - Psyr_1712 0.67 +2.5
1,938,574 + Psyr_1712 0.77 -0.9
1,938,578 + Psyr_1712 0.77 +2.5
1,938,579 - Psyr_1712 0.77 +4.6
1,938,579 - Psyr_1712 0.77 +1.0
1,938,823 + -0.7
1,938,824 - -0.0
1,938,824 - +1.5
1,938,843 + -1.0
1,938,875 + -3.0
1,938,915 + -2.5
1,938,921 + -3.2
1,938,998 + +2.3
1,938,999 - +3.1
1,939,063 + -4.0
1,939,064 - +3.5
1,939,139 + -2.0
1,939,139 + -1.6
1,939,139 + +0.3
1,939,140 - -0.5
1,939,140 - +1.0
1,939,151 + -2.0
1,939,152 - +3.1
1,939,152 - +3.7
1,939,263 + +1.0
1,939,264 - +2.0
1,939,401 - Psyr_1713 0.48 -1.6

Or see this region's nucleotide sequence