Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1710

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1709 and Psyr_1710 are separated by 35 nucleotidesPsyr_1710 and Psyr_1711 are separated by 126 nucleotidesPsyr_1711 and Psyr_1712 are separated by 66 nucleotides Psyr_1709: Psyr_1709 - Major facilitator superfamily, at 1,934,834 to 1,936,147 _1709 Psyr_1710: Psyr_1710 - Protein of unknown function DUF1238, at 1,936,183 to 1,937,175 _1710 Psyr_1711: Psyr_1711 - conserved hypothetical protein, at 1,937,302 to 1,937,598 _1711 Psyr_1712: Psyr_1712 - conserved hypothetical protein, at 1,937,665 to 1,938,849 _1712 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1935.206 kb on + strand, within Psyr_1709at 1935.206 kb on + strand, within Psyr_1709at 1935.206 kb on + strand, within Psyr_1709at 1935.206 kb on + strand, within Psyr_1709at 1935.207 kb on - strand, within Psyr_1709at 1935.207 kb on - strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.210 kb on - strand, within Psyr_1709at 1935.210 kb on - strandat 1935.210 kb on - strand, within Psyr_1709at 1935.210 kb on - strand, within Psyr_1709at 1935.210 kb on - strand, within Psyr_1709at 1935.504 kb on - strand, within Psyr_1709at 1935.576 kb on - strand, within Psyr_1709at 1935.576 kb on - strand, within Psyr_1709at 1935.599 kb on + strand, within Psyr_1709at 1935.599 kb on + strand, within Psyr_1709at 1935.600 kb on - strand, within Psyr_1709at 1935.600 kb on - strand, within Psyr_1709at 1935.683 kb on + strand, within Psyr_1709at 1935.767 kb on + strand, within Psyr_1709at 1935.767 kb on + strand, within Psyr_1709at 1935.767 kb on + strand, within Psyr_1709at 1935.767 kb on + strand, within Psyr_1709at 1935.767 kb on + strand, within Psyr_1709at 1935.768 kb on - strand, within Psyr_1709at 1935.768 kb on - strand, within Psyr_1709at 1935.768 kb on - strand, within Psyr_1709at 1935.768 kb on - strand, within Psyr_1709at 1935.965 kb on + strand, within Psyr_1709at 1936.028 kb on + strandat 1936.145 kb on + strandat 1936.146 kb on - strandat 1936.193 kb on + strandat 1936.193 kb on + strandat 1936.194 kb on - strandat 1936.530 kb on + strand, within Psyr_1710at 1936.531 kb on - strand, within Psyr_1710at 1936.600 kb on + strand, within Psyr_1710at 1936.699 kb on + strand, within Psyr_1710at 1936.699 kb on + strand, within Psyr_1710at 1936.699 kb on + strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.700 kb on - strand, within Psyr_1710at 1936.757 kb on - strand, within Psyr_1710at 1936.757 kb on - strand, within Psyr_1710at 1936.786 kb on + strand, within Psyr_1710at 1936.787 kb on - strand, within Psyr_1710at 1936.787 kb on - strand, within Psyr_1710at 1936.787 kb on - strand, within Psyr_1710at 1936.787 kb on - strandat 1936.787 kb on - strand, within Psyr_1710at 1936.792 kb on + strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1936.793 kb on - strand, within Psyr_1710at 1937.173 kb on + strandat 1937.174 kb on - strandat 1937.231 kb on - strandat 1937.239 kb on - strandat 1937.255 kb on + strandat 1937.255 kb on + strandat 1937.256 kb on - strandat 1937.256 kb on - strandat 1937.316 kb on + strandat 1937.316 kb on + strandat 1937.316 kb on + strandat 1937.448 kb on - strand, within Psyr_1711at 1937.600 kb on + strandat 1937.600 kb on + strandat 1937.601 kb on - strandat 1937.601 kb on - strandat 1937.622 kb on + strandat 1937.622 kb on + strandat 1937.622 kb on + strandat 1937.668 kb on + strandat 1937.686 kb on - strandat 1937.757 kb on + strandat 1937.758 kb on - strandat 1937.806 kb on + strand, within Psyr_1712at 1937.807 kb on - strand, within Psyr_1712at 1937.807 kb on - strand, within Psyr_1712at 1937.807 kb on - strand, within Psyr_1712at 1937.807 kb on - strand, within Psyr_1712at 1938.062 kb on - strand, within Psyr_1712at 1938.092 kb on - strand, within Psyr_1712at 1938.098 kb on + strand, within Psyr_1712

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,935,206 + Psyr_1709 0.28 +1.6
1,935,206 + Psyr_1709 0.28 -4.7
1,935,206 + Psyr_1709 0.28 +1.0
1,935,206 + Psyr_1709 0.28 -0.8
1,935,207 - Psyr_1709 0.28 -0.7
1,935,207 - Psyr_1709 0.28 +1.6
1,935,209 + Psyr_1709 0.29 -0.9
1,935,209 + Psyr_1709 0.29 +1.6
1,935,209 + Psyr_1709 0.29 +2.0
1,935,209 + Psyr_1709 0.29 +2.0
1,935,209 + Psyr_1709 0.29 +0.4
1,935,209 + Psyr_1709 0.29 -0.5
1,935,209 + Psyr_1709 0.29 -0.4
1,935,209 + Psyr_1709 0.29 -0.0
1,935,210 - Psyr_1709 0.29 -1.5
1,935,210 - -0.0
1,935,210 - Psyr_1709 0.29 +2.0
1,935,210 - Psyr_1709 0.29 +2.0
1,935,210 - Psyr_1709 0.29 -0.0
1,935,504 - Psyr_1709 0.51 +2.0
1,935,576 - Psyr_1709 0.56 +3.8
1,935,576 - Psyr_1709 0.56 +2.6
1,935,599 + Psyr_1709 0.58 +2.3
1,935,599 + Psyr_1709 0.58 +1.1
1,935,600 - Psyr_1709 0.58 -0.8
1,935,600 - Psyr_1709 0.58 -0.3
1,935,683 + Psyr_1709 0.65 -1.1
1,935,767 + Psyr_1709 0.71 -1.2
1,935,767 + Psyr_1709 0.71 -0.8
1,935,767 + Psyr_1709 0.71 -1.2
1,935,767 + Psyr_1709 0.71 +4.6
1,935,767 + Psyr_1709 0.71 +0.8
1,935,768 - Psyr_1709 0.71 +1.6
1,935,768 - Psyr_1709 0.71 +4.6
1,935,768 - Psyr_1709 0.71 -1.6
1,935,768 - Psyr_1709 0.71 -0.8
1,935,965 + Psyr_1709 0.86 -0.0
1,936,028 + -1.4
1,936,145 + +0.6
1,936,146 - +0.1
1,936,193 + -0.2
1,936,193 + -0.3
1,936,194 - +1.6
1,936,530 + Psyr_1710 0.35 -3.2
1,936,531 - Psyr_1710 0.35 +0.2
1,936,600 + Psyr_1710 0.42 +3.1
1,936,699 + Psyr_1710 0.52 +2.8
1,936,699 + Psyr_1710 0.52 -0.6
1,936,699 + Psyr_1710 0.52 -1.2
1,936,700 - Psyr_1710 0.52 +0.3
1,936,700 - Psyr_1710 0.52 -0.0
1,936,700 - Psyr_1710 0.52 +3.1
1,936,700 - Psyr_1710 0.52 -0.9
1,936,700 - Psyr_1710 0.52 +2.0
1,936,757 - Psyr_1710 0.58 +2.0
1,936,757 - Psyr_1710 0.58 +3.1
1,936,786 + Psyr_1710 0.61 +4.3
1,936,787 - Psyr_1710 0.61 +3.1
1,936,787 - Psyr_1710 0.61 +1.6
1,936,787 - Psyr_1710 0.61 -0.8
1,936,787 - +2.3
1,936,787 - Psyr_1710 0.61 -0.3
1,936,792 + Psyr_1710 0.61 +0.5
1,936,793 - Psyr_1710 0.61 +2.0
1,936,793 - Psyr_1710 0.61 +3.7
1,936,793 - Psyr_1710 0.61 -0.2
1,936,793 - Psyr_1710 0.61 +2.8
1,936,793 - Psyr_1710 0.61 -1.4
1,937,173 + -0.9
1,937,174 - -1.7
1,937,231 - -2.1
1,937,239 - -1.9
1,937,255 + -1.1
1,937,255 + +2.8
1,937,256 - -0.9
1,937,256 - -1.2
1,937,316 + -1.0
1,937,316 + +2.6
1,937,316 + +3.3
1,937,448 - Psyr_1711 0.49 -0.1
1,937,600 + -1.5
1,937,600 + -0.0
1,937,601 - -0.0
1,937,601 - -2.4
1,937,622 + -0.0
1,937,622 + -2.0
1,937,622 + -1.5
1,937,668 + -0.0
1,937,686 - +0.5
1,937,757 + +0.2
1,937,758 - +0.5
1,937,806 + Psyr_1712 0.12 -0.5
1,937,807 - Psyr_1712 0.12 +3.1
1,937,807 - Psyr_1712 0.12 -0.0
1,937,807 - Psyr_1712 0.12 -1.1
1,937,807 - Psyr_1712 0.12 +0.7
1,938,062 - Psyr_1712 0.34 +2.3
1,938,092 - Psyr_1712 0.36 -0.2
1,938,098 + Psyr_1712 0.37 -1.3

Or see this region's nucleotide sequence