Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1690

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1688 and Psyr_1689 are separated by 29 nucleotidesPsyr_1689 and Psyr_1690 are separated by 12 nucleotidesPsyr_1690 and Psyr_1691 are separated by 182 nucleotidesPsyr_1691 and Psyr_1692 are separated by 12 nucleotides Psyr_1688: Psyr_1688 - Protein of unknown function DUF1315, at 1,896,638 to 1,896,898 _1688 Psyr_1689: Psyr_1689 - conserved hypothetical protein, at 1,896,928 to 1,897,728 _1689 Psyr_1690: Psyr_1690 - Peptidase M1, membrane alanine aminopeptidase, at 1,897,741 to 1,900,407 _1690 Psyr_1691: Psyr_1691 - hypothetical protein, at 1,900,590 to 1,900,832 _1691 Psyr_1692: Psyr_1692 - conserved hypothetical protein, at 1,900,845 to 1,901,498 _1692 Position (kb) 1897 1898 1899 1900 1901Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1896.964 kb on + strandat 1897.084 kb on + strand, within Psyr_1689at 1897.096 kb on + strand, within Psyr_1689at 1897.231 kb on + strand, within Psyr_1689at 1897.231 kb on + strand, within Psyr_1689at 1897.231 kb on + strand, within Psyr_1689at 1897.535 kb on + strand, within Psyr_1689at 1897.535 kb on + strand, within Psyr_1689at 1897.536 kb on - strand, within Psyr_1689at 1897.536 kb on - strand, within Psyr_1689at 1897.658 kb on - strandat 1897.658 kb on - strandat 1897.696 kb on + strandat 1897.697 kb on - strandat 1897.697 kb on - strandat 1897.706 kb on - strandat 1897.706 kb on - strandat 1897.706 kb on - strandat 1897.726 kb on + strandat 1897.726 kb on + strandat 1897.726 kb on + strandat 1897.726 kb on + strandat 1897.726 kb on + strandat 1897.727 kb on - strandat 1897.727 kb on - strandat 1897.768 kb on + strandat 1897.780 kb on + strandat 1897.781 kb on - strandat 1897.796 kb on - strandat 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.086 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.146 kb on + strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.147 kb on - strand, within Psyr_1690at 1898.149 kb on + strand, within Psyr_1690at 1898.367 kb on + strand, within Psyr_1690at 1898.367 kb on + strand, within Psyr_1690at 1898.368 kb on - strand, within Psyr_1690at 1898.368 kb on - strand, within Psyr_1690at 1898.395 kb on - strand, within Psyr_1690at 1898.395 kb on - strand, within Psyr_1690at 1898.398 kb on + strand, within Psyr_1690at 1898.398 kb on + strand, within Psyr_1690at 1898.398 kb on + strand, within Psyr_1690at 1898.398 kb on + strand, within Psyr_1690at 1898.399 kb on - strand, within Psyr_1690at 1898.479 kb on + strand, within Psyr_1690at 1898.479 kb on + strand, within Psyr_1690at 1898.479 kb on + strand, within Psyr_1690at 1898.565 kb on + strand, within Psyr_1690at 1898.566 kb on - strand, within Psyr_1690at 1898.566 kb on - strand, within Psyr_1690at 1898.653 kb on + strand, within Psyr_1690at 1898.653 kb on + strand, within Psyr_1690at 1898.732 kb on - strand, within Psyr_1690at 1898.798 kb on - strand, within Psyr_1690at 1898.805 kb on + strand, within Psyr_1690at 1898.806 kb on - strand, within Psyr_1690at 1898.884 kb on + strand, within Psyr_1690at 1898.885 kb on - strand, within Psyr_1690at 1898.885 kb on - strand, within Psyr_1690at 1898.977 kb on + strand, within Psyr_1690at 1898.978 kb on - strand, within Psyr_1690at 1899.076 kb on + strand, within Psyr_1690at 1899.118 kb on + strand, within Psyr_1690at 1899.119 kb on - strand, within Psyr_1690at 1899.139 kb on + strand, within Psyr_1690at 1899.139 kb on + strand, within Psyr_1690at 1899.295 kb on - strand, within Psyr_1690at 1899.500 kb on + strand, within Psyr_1690at 1899.646 kb on + strand, within Psyr_1690at 1899.646 kb on + strand, within Psyr_1690at 1899.647 kb on - strand, within Psyr_1690at 1899.647 kb on - strand, within Psyr_1690at 1899.790 kb on + strand, within Psyr_1690at 1899.790 kb on + strand, within Psyr_1690at 1899.790 kb on + strand, within Psyr_1690at 1899.790 kb on + strand, within Psyr_1690at 1899.790 kb on + strand, within Psyr_1690at 1899.790 kb on + strand, within Psyr_1690at 1899.791 kb on - strand, within Psyr_1690at 1899.791 kb on - strand, within Psyr_1690at 1899.791 kb on - strand, within Psyr_1690at 1899.791 kb on - strand, within Psyr_1690at 1900.375 kb on + strandat 1900.375 kb on + strandat 1900.376 kb on - strandat 1900.376 kb on - strandat 1900.376 kb on - strandat 1900.584 kb on + strandat 1900.585 kb on - strandat 1900.628 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.713 kb on - strand, within Psyr_1691at 1900.734 kb on + strand, within Psyr_1691at 1900.734 kb on + strand, within Psyr_1691at 1900.777 kb on + strand, within Psyr_1691at 1900.777 kb on + strand, within Psyr_1691at 1900.781 kb on + strand, within Psyr_1691at 1900.800 kb on + strand, within Psyr_1691at 1900.800 kb on + strand, within Psyr_1691at 1900.800 kb on + strand, within Psyr_1691at 1900.801 kb on - strand, within Psyr_1691at 1900.801 kb on - strand, within Psyr_1691at 1900.801 kb on - strand, within Psyr_1691at 1900.809 kb on + strandat 1900.809 kb on + strandat 1900.810 kb on - strandat 1900.854 kb on - strandat 1900.854 kb on - strandat 1900.911 kb on + strand, within Psyr_1692at 1900.911 kb on + strand, within Psyr_1692at 1900.911 kb on + strand, within Psyr_1692at 1900.911 kb on + strand, within Psyr_1692at 1900.912 kb on - strand, within Psyr_1692at 1900.912 kb on - strand, within Psyr_1692at 1900.912 kb on - strand, within Psyr_1692at 1900.912 kb on - strand, within Psyr_1692at 1901.045 kb on - strand, within Psyr_1692at 1901.045 kb on - strand, within Psyr_1692at 1901.073 kb on - strand, within Psyr_1692at 1901.196 kb on + strand, within Psyr_1692at 1901.214 kb on + strand, within Psyr_1692at 1901.214 kb on + strand, within Psyr_1692at 1901.215 kb on - strand, within Psyr_1692at 1901.215 kb on - strand, within Psyr_1692at 1901.224 kb on + strand, within Psyr_1692at 1901.225 kb on - strand, within Psyr_1692

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,896,964 + -0.7
1,897,084 + Psyr_1689 0.19 -1.8
1,897,096 + Psyr_1689 0.21 +4.4
1,897,231 + Psyr_1689 0.38 -0.6
1,897,231 + Psyr_1689 0.38 -1.2
1,897,231 + Psyr_1689 0.38 +3.6
1,897,535 + Psyr_1689 0.76 -0.3
1,897,535 + Psyr_1689 0.76 +1.0
1,897,536 - Psyr_1689 0.76 +3.0
1,897,536 - Psyr_1689 0.76 +2.4
1,897,658 - +2.8
1,897,658 - -0.5
1,897,696 + +2.8
1,897,697 - -0.8
1,897,697 - +0.7
1,897,706 - -2.4
1,897,706 - -1.3
1,897,706 - +4.4
1,897,726 + -0.9
1,897,726 + +1.6
1,897,726 + -0.9
1,897,726 + +2.0
1,897,726 + -0.3
1,897,727 - +2.8
1,897,727 - -1.3
1,897,768 + -2.2
1,897,780 + +0.9
1,897,781 - +2.0
1,897,796 - -1.7
1,898,086 + Psyr_1690 0.13 +0.5
1,898,086 + Psyr_1690 0.13 +0.8
1,898,086 + Psyr_1690 0.13 -2.1
1,898,086 + Psyr_1690 0.13 -0.3
1,898,086 + Psyr_1690 0.13 +0.3
1,898,086 + Psyr_1690 0.13 +1.2
1,898,146 + Psyr_1690 0.15 -3.1
1,898,146 + Psyr_1690 0.15 +4.2
1,898,146 + Psyr_1690 0.15 +3.0
1,898,146 + Psyr_1690 0.15 +2.3
1,898,146 + Psyr_1690 0.15 +0.4
1,898,146 + Psyr_1690 0.15 -0.3
1,898,146 + Psyr_1690 0.15 +3.6
1,898,146 + Psyr_1690 0.15 -0.2
1,898,147 - Psyr_1690 0.15 +1.6
1,898,147 - Psyr_1690 0.15 -1.9
1,898,147 - Psyr_1690 0.15 -0.4
1,898,147 - Psyr_1690 0.15 -1.9
1,898,147 - Psyr_1690 0.15 -1.6
1,898,147 - Psyr_1690 0.15 +3.2
1,898,147 - Psyr_1690 0.15 +3.2
1,898,147 - Psyr_1690 0.15 -1.2
1,898,147 - Psyr_1690 0.15 +3.3
1,898,147 - Psyr_1690 0.15 -2.1
1,898,147 - Psyr_1690 0.15 -3.5
1,898,149 + Psyr_1690 0.15 +3.0
1,898,367 + Psyr_1690 0.23 +3.6
1,898,367 + Psyr_1690 0.23 +3.0
1,898,368 - Psyr_1690 0.24 +3.0
1,898,368 - Psyr_1690 0.24 +2.0
1,898,395 - Psyr_1690 0.25 -2.3
1,898,395 - Psyr_1690 0.25 +2.6
1,898,398 + Psyr_1690 0.25 -2.2
1,898,398 + Psyr_1690 0.25 -1.7
1,898,398 + Psyr_1690 0.25 +3.9
1,898,398 + Psyr_1690 0.25 +2.0
1,898,399 - Psyr_1690 0.25 +2.8
1,898,479 + Psyr_1690 0.28 +3.7
1,898,479 + Psyr_1690 0.28 +2.3
1,898,479 + Psyr_1690 0.28 -0.9
1,898,565 + Psyr_1690 0.31 +1.0
1,898,566 - Psyr_1690 0.31 -0.4
1,898,566 - Psyr_1690 0.31 -1.8
1,898,653 + Psyr_1690 0.34 +0.8
1,898,653 + Psyr_1690 0.34 +2.6
1,898,732 - Psyr_1690 0.37 -1.0
1,898,798 - Psyr_1690 0.40 -2.1
1,898,805 + Psyr_1690 0.40 +0.7
1,898,806 - Psyr_1690 0.40 -1.0
1,898,884 + Psyr_1690 0.43 -1.0
1,898,885 - Psyr_1690 0.43 -0.6
1,898,885 - Psyr_1690 0.43 +2.0
1,898,977 + Psyr_1690 0.46 +0.9
1,898,978 - Psyr_1690 0.46 +3.3
1,899,076 + Psyr_1690 0.50 +2.3
1,899,118 + Psyr_1690 0.52 +1.1
1,899,119 - Psyr_1690 0.52 -0.9
1,899,139 + Psyr_1690 0.52 +2.6
1,899,139 + Psyr_1690 0.52 +0.9
1,899,295 - Psyr_1690 0.58 +3.7
1,899,500 + Psyr_1690 0.66 -0.6
1,899,646 + Psyr_1690 0.71 +0.8
1,899,646 + Psyr_1690 0.71 -1.2
1,899,647 - Psyr_1690 0.71 +3.8
1,899,647 - Psyr_1690 0.71 +1.6
1,899,790 + Psyr_1690 0.77 +1.0
1,899,790 + Psyr_1690 0.77 +3.0
1,899,790 + Psyr_1690 0.77 +2.0
1,899,790 + Psyr_1690 0.77 -1.8
1,899,790 + Psyr_1690 0.77 +2.6
1,899,790 + Psyr_1690 0.77 -3.1
1,899,791 - Psyr_1690 0.77 -2.3
1,899,791 - Psyr_1690 0.77 +0.2
1,899,791 - Psyr_1690 0.77 +1.6
1,899,791 - Psyr_1690 0.77 -1.4
1,900,375 + +2.3
1,900,375 + -2.1
1,900,376 - -0.6
1,900,376 - +1.0
1,900,376 - -0.7
1,900,584 + -2.4
1,900,585 - +3.7
1,900,628 + Psyr_1691 0.16 +1.9
1,900,712 + Psyr_1691 0.50 -2.8
1,900,712 + Psyr_1691 0.50 +1.0
1,900,712 + Psyr_1691 0.50 +3.2
1,900,712 + Psyr_1691 0.50 -0.9
1,900,712 + Psyr_1691 0.50 +2.3
1,900,713 - Psyr_1691 0.51 +2.3
1,900,734 + Psyr_1691 0.59 -2.2
1,900,734 + Psyr_1691 0.59 -1.0
1,900,777 + Psyr_1691 0.77 +2.3
1,900,777 + Psyr_1691 0.77 +4.1
1,900,781 + Psyr_1691 0.79 -0.0
1,900,800 + Psyr_1691 0.86 +0.8
1,900,800 + Psyr_1691 0.86 -1.6
1,900,800 + Psyr_1691 0.86 -2.2
1,900,801 - Psyr_1691 0.87 +2.0
1,900,801 - Psyr_1691 0.87 +4.5
1,900,801 - Psyr_1691 0.87 -0.8
1,900,809 + +0.1
1,900,809 + -0.4
1,900,810 - -0.9
1,900,854 - -0.7
1,900,854 - +0.2
1,900,911 + Psyr_1692 0.10 +2.0
1,900,911 + Psyr_1692 0.10 -1.2
1,900,911 + Psyr_1692 0.10 +0.3
1,900,911 + Psyr_1692 0.10 +3.6
1,900,912 - Psyr_1692 0.10 +3.4
1,900,912 - Psyr_1692 0.10 +3.6
1,900,912 - Psyr_1692 0.10 -1.4
1,900,912 - Psyr_1692 0.10 +4.1
1,901,045 - Psyr_1692 0.31 -3.2
1,901,045 - Psyr_1692 0.31 +3.3
1,901,073 - Psyr_1692 0.35 -1.3
1,901,196 + Psyr_1692 0.54 +3.1
1,901,214 + Psyr_1692 0.56 +1.0
1,901,214 + Psyr_1692 0.56 +3.1
1,901,215 - Psyr_1692 0.57 +2.6
1,901,215 - Psyr_1692 0.57 -0.0
1,901,224 + Psyr_1692 0.58 +3.6
1,901,225 - Psyr_1692 0.58 -0.0

Or see this region's nucleotide sequence