Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1632

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1630 and Psyr_1631 overlap by 4 nucleotidesPsyr_1631 and Psyr_1632 are separated by 136 nucleotidesPsyr_1632 and Psyr_1633 are separated by 42 nucleotidesPsyr_1633 and Psyr_1634 overlap by 4 nucleotides Psyr_1630: Psyr_1630 - ABC transporter, at 1,833,861 to 1,834,793 _1630 Psyr_1631: Psyr_1631 - ABC-2, at 1,834,790 to 1,835,578 _1631 Psyr_1632: Psyr_1632 - ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2, at 1,835,715 to 1,837,931 _1632 Psyr_1633: Psyr_1633 - MotA/TolQ/ExbB proton channel, at 1,837,974 to 1,838,690 _1633 Psyr_1634: Psyr_1634 - Biopolymer transport protein ExbD/TolR, at 1,838,687 to 1,839,118 _1634 Position (kb) 1835 1836 1837 1838Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1834.722 kb on - strandat 1834.724 kb on + strandat 1834.725 kb on - strandat 1834.919 kb on + strand, within Psyr_1631at 1834.919 kb on + strand, within Psyr_1631at 1834.920 kb on - strand, within Psyr_1631at 1834.920 kb on - strand, within Psyr_1631at 1834.976 kb on - strand, within Psyr_1631at 1834.976 kb on - strand, within Psyr_1631at 1834.976 kb on - strand, within Psyr_1631at 1834.979 kb on + strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.980 kb on - strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.988 kb on + strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1834.989 kb on - strand, within Psyr_1631at 1835.148 kb on + strand, within Psyr_1631at 1835.148 kb on + strand, within Psyr_1631at 1835.148 kb on + strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.149 kb on - strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.214 kb on + strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.215 kb on - strand, within Psyr_1631at 1835.315 kb on - strand, within Psyr_1631at 1835.315 kb on - strand, within Psyr_1631at 1835.354 kb on + strand, within Psyr_1631at 1835.354 kb on + strand, within Psyr_1631at 1835.355 kb on - strand, within Psyr_1631at 1835.355 kb on - strand, within Psyr_1631at 1835.355 kb on - strand, within Psyr_1631at 1835.373 kb on - strand, within Psyr_1631at 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.528 kb on + strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.529 kb on - strandat 1835.531 kb on - strandat 1835.576 kb on + strandat 1835.576 kb on + strandat 1835.837 kb on + strandat 1835.841 kb on + strandat 1836.060 kb on + strand, within Psyr_1632at 1836.426 kb on + strand, within Psyr_1632at 1836.427 kb on - strand, within Psyr_1632at 1836.998 kb on - strand, within Psyr_1632at 1837.260 kb on + strand, within Psyr_1632at 1837.260 kb on + strand, within Psyr_1632at 1837.260 kb on + strand, within Psyr_1632at 1837.260 kb on + strand, within Psyr_1632at 1837.261 kb on - strand, within Psyr_1632at 1837.261 kb on - strand, within Psyr_1632at 1837.704 kb on - strand, within Psyr_1632at 1837.704 kb on - strand, within Psyr_1632at 1837.836 kb on + strandat 1837.836 kb on + strandat 1837.837 kb on - strandat 1837.941 kb on + strandat 1837.973 kb on + strandat 1837.973 kb on + strandat 1837.978 kb on + strandat 1837.978 kb on + strandat 1838.328 kb on + strand, within Psyr_1633at 1838.328 kb on + strand, within Psyr_1633

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,834,722 - +1.6
1,834,724 + -0.5
1,834,725 - -0.7
1,834,919 + Psyr_1631 0.16 +3.8
1,834,919 + Psyr_1631 0.16 -2.2
1,834,920 - Psyr_1631 0.16 +2.8
1,834,920 - Psyr_1631 0.16 +1.3
1,834,976 - Psyr_1631 0.24 -2.2
1,834,976 - Psyr_1631 0.24 -0.5
1,834,976 - Psyr_1631 0.24 +1.6
1,834,979 + Psyr_1631 0.24 +3.6
1,834,980 - Psyr_1631 0.24 +0.4
1,834,980 - Psyr_1631 0.24 +1.6
1,834,980 - Psyr_1631 0.24 -1.2
1,834,980 - Psyr_1631 0.24 +1.0
1,834,980 - Psyr_1631 0.24 -3.1
1,834,980 - Psyr_1631 0.24 -1.5
1,834,988 + Psyr_1631 0.25 +3.5
1,834,988 + Psyr_1631 0.25 -1.1
1,834,988 + Psyr_1631 0.25 +1.0
1,834,988 + Psyr_1631 0.25 +1.3
1,834,988 + Psyr_1631 0.25 +1.0
1,834,988 + Psyr_1631 0.25 -1.3
1,834,988 + Psyr_1631 0.25 -1.5
1,834,988 + Psyr_1631 0.25 -0.2
1,834,989 - Psyr_1631 0.25 +0.4
1,834,989 - Psyr_1631 0.25 +3.7
1,834,989 - Psyr_1631 0.25 -0.5
1,834,989 - Psyr_1631 0.25 -3.5
1,834,989 - Psyr_1631 0.25 +2.0
1,834,989 - Psyr_1631 0.25 +0.0
1,834,989 - Psyr_1631 0.25 +2.8
1,835,148 + Psyr_1631 0.45 +3.7
1,835,148 + Psyr_1631 0.45 -0.4
1,835,148 + Psyr_1631 0.45 -2.4
1,835,149 - Psyr_1631 0.46 +3.0
1,835,149 - Psyr_1631 0.46 -0.1
1,835,149 - Psyr_1631 0.46 -1.4
1,835,149 - Psyr_1631 0.46 +2.3
1,835,149 - Psyr_1631 0.46 -0.8
1,835,214 + Psyr_1631 0.54 +3.8
1,835,214 + Psyr_1631 0.54 -0.0
1,835,214 + Psyr_1631 0.54 -0.6
1,835,214 + Psyr_1631 0.54 -2.3
1,835,215 - Psyr_1631 0.54 +2.3
1,835,215 - Psyr_1631 0.54 +3.0
1,835,215 - Psyr_1631 0.54 -1.0
1,835,215 - Psyr_1631 0.54 +2.0
1,835,215 - Psyr_1631 0.54 +4.2
1,835,215 - Psyr_1631 0.54 +3.3
1,835,215 - Psyr_1631 0.54 +1.0
1,835,215 - Psyr_1631 0.54 -0.6
1,835,315 - Psyr_1631 0.67 -1.3
1,835,315 - Psyr_1631 0.67 -0.9
1,835,354 + Psyr_1631 0.71 +1.3
1,835,354 + Psyr_1631 0.71 +2.8
1,835,355 - Psyr_1631 0.72 +2.3
1,835,355 - Psyr_1631 0.72 +3.6
1,835,355 - Psyr_1631 0.72 -0.0
1,835,373 - Psyr_1631 0.74 -2.1
1,835,528 + +1.6
1,835,528 + -0.7
1,835,528 + +3.5
1,835,528 + +2.3
1,835,528 + +2.0
1,835,529 - -3.7
1,835,529 - +2.8
1,835,529 - +1.0
1,835,529 - +2.3
1,835,529 - -0.7
1,835,529 - +2.8
1,835,529 - +2.8
1,835,529 - -1.4
1,835,529 - -0.6
1,835,531 - +0.7
1,835,576 + -0.9
1,835,576 + -1.3
1,835,837 + +3.3
1,835,841 + -1.3
1,836,060 + Psyr_1632 0.16 +3.3
1,836,426 + Psyr_1632 0.32 -0.0
1,836,427 - Psyr_1632 0.32 +0.7
1,836,998 - Psyr_1632 0.58 -0.9
1,837,260 + Psyr_1632 0.70 +3.3
1,837,260 + Psyr_1632 0.70 +0.5
1,837,260 + Psyr_1632 0.70 -0.5
1,837,260 + Psyr_1632 0.70 +0.1
1,837,261 - Psyr_1632 0.70 -0.0
1,837,261 - Psyr_1632 0.70 -0.9
1,837,704 - Psyr_1632 0.90 +0.6
1,837,704 - Psyr_1632 0.90 +2.8
1,837,836 + -0.8
1,837,836 + +3.6
1,837,837 - -2.9
1,837,941 + +3.3
1,837,973 + -3.4
1,837,973 + -1.1
1,837,978 + +2.3
1,837,978 + +2.0
1,838,328 + Psyr_1633 0.49 +0.3
1,838,328 + Psyr_1633 0.49 -0.8

Or see this region's nucleotide sequence