Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1587

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,785,158	+		Psyr_1586	0.77	-1.3
1,785,159	-		Psyr_1586	0.77	-1.8
1,785,159	-		Psyr_1586	0.77	+2.3
1,785,159	-		Psyr_1586	0.77	-0.5
1,785,159	-		Psyr_1586	0.77	-1.2
1,785,159	-		Psyr_1586	0.77	-1.1
1,785,161	+		Psyr_1586	0.78	+3.0
1,785,161	+		Psyr_1586	0.78	+0.5
1,785,161	+		Psyr_1586	0.78	-1.4
1,785,162	-		Psyr_1586	0.78	-1.9
1,785,162	-		Psyr_1586	0.78	-1.6
1,785,171	-		Psyr_1586	0.78	-2.2
1,785,171	-		Psyr_1586	0.78	-1.3
1,785,187	+		Psyr_1586	0.79	-2.0
1,785,187	+		Psyr_1586	0.79	+0.1
1,785,187	+		Psyr_1586	0.79	-0.9
1,785,188	-		Psyr_1586	0.79	+0.4
1,785,251	+		Psyr_1586	0.82	-0.5
1,785,251	+		Psyr_1586	0.82	+0.0
1,785,251	+		Psyr_1586	0.82	-1.3
1,785,251	+		Psyr_1586	0.82	+2.3
1,785,251	+		Psyr_1586	0.82	-4.0
1,785,251	+		Psyr_1586	0.82	+0.4
1,785,252	-		Psyr_1586	0.82	+2.0
1,785,252	-		Psyr_1586	0.82	-0.8
1,785,281	+		Psyr_1586	0.84	-2.0
1,785,540	+				+0.4
1,785,541	-				-1.3
1,785,541	-				-1.2
1,785,594	+				-0.6
1,785,594	+				+3.8
1,785,653	+				+2.0
1,785,653	+				+2.3
1,785,653	+				+0.0
1,785,654	-				+3.9
1,785,654	-				-0.4
1,785,654	-				+3.8
1,785,880	-				-0.1
1,785,880	-				+0.2
1,785,880	-				-0.1
1,785,898	+				+2.0
1,785,898	+				+3.0
1,785,899	-				+0.0
1,785,899	-				-1.6
1,785,899	-				-0.2
1,785,899	-				+0.3
1,785,899	-				-1.9
1,786,068	-				-0.7
1,786,068	-				+2.8
1,786,094	+				+1.6
1,786,094	+				-0.8
1,786,094	+				-2.8
1,786,095	-				-1.5
1,786,095	-				+1.6
1,786,123	+				-2.2
1,786,123	+				-1.6
1,786,123	+				+3.0
1,786,123	+				+2.0
1,786,124	-				+2.8
1,786,148	+				+2.8
1,786,148	+				-1.6
1,786,149	-				+1.6
1,786,307	-				-3.6
1,786,421	+		Psyr_1587	0.36	+1.0
1,786,422	-		Psyr_1587	0.36	-0.4
1,786,422	-		Psyr_1587	0.36	+2.0
1,786,422	-		Psyr_1587	0.36	-4.7
1,786,459	+		Psyr_1587	0.40	+3.6
1,786,459	+		Psyr_1587	0.40	+2.3
1,786,460	-		Psyr_1587	0.40	-3.1
1,786,545	-		Psyr_1587	0.49	+0.9
1,786,642	-		Psyr_1587	0.59	+1.1
1,786,920	-		Psyr_1587	0.89	+3.3
1,787,040	-				+3.0
1,787,040	-				+3.8
1,787,746	+		Psyr_1588	0.68	-0.5
1,787,746	+		Psyr_1588	0.68	-2.3
1,787,874	+		Psyr_1588	0.81	-1.0
1,787,920	+		Psyr_1588	0.86	-0.4
1,787,920	+		Psyr_1588	0.86	-1.7
1,787,920	+		Psyr_1588	0.86	+3.6
1,787,920	+		Psyr_1588	0.86	+1.0
1,787,921	-		Psyr_1588	0.87	+1.6
1,787,921	-		Psyr_1588	0.87	+3.2
1,787,928	+		Psyr_1588	0.87	+2.0
1,787,929	-		Psyr_1588	0.87	+0.0