Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1486

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,672,660	+		Psyr_1483	0.30	-3.5
1,672,661	-		Psyr_1483	0.30	+1.6
1,672,661	-		Psyr_1483	0.30	-1.8
1,672,674	-		Psyr_1483	0.35	-2.9
1,672,701	+		Psyr_1483	0.45	+2.4
1,672,702	-		Psyr_1483	0.46	+0.3
1,672,702	-		Psyr_1483	0.46	+3.8
1,672,773	-		Psyr_1483	0.72	+0.1
1,672,826	+				+0.1
1,672,826	+				-2.0
1,672,826	+				+2.6
1,672,826	+				+3.4
1,672,826	+				+0.1
1,672,826	+				-4.5
1,672,827	-				-1.3
1,672,827	-				-1.2
1,672,827	-				+2.1
1,672,827	-				+2.4
1,672,827	-				-0.1
1,672,832	-				+1.6
1,672,833	+				-2.1
1,672,834	-				-1.2
1,672,842	+				-1.2
1,672,843	-				-0.5
1,672,918	-				-1.6
1,672,938	+		Psyr_1484	0.15	-3.3
1,672,938	+		Psyr_1484	0.15	+0.3
1,672,938	+		Psyr_1484	0.15	+2.1
1,672,938	+		Psyr_1484	0.15	+2.1
1,672,938	+		Psyr_1484	0.15	+0.7
1,672,938	+		Psyr_1484	0.15	+4.2
1,672,938	+		Psyr_1484	0.15	+2.6
1,672,938	+		Psyr_1484	0.15	-0.7
1,672,938	+		Psyr_1484	0.15	+2.1
1,672,938	+		Psyr_1484	0.15	-0.9
1,672,939	-		Psyr_1484	0.15	+0.1
1,672,939	-		Psyr_1484	0.15	+2.6
1,672,939	-		Psyr_1484	0.15	-0.9
1,672,939	-		Psyr_1484	0.15	-0.7
1,672,939	-		Psyr_1484	0.15	-2.4
1,672,939	-		Psyr_1484	0.15	-2.7
1,672,939	-		Psyr_1484	0.15	-1.8
1,672,939	-		Psyr_1484	0.15	+0.1
1,672,939	-		Psyr_1484	0.15	+2.1
1,672,939	-		Psyr_1484	0.15	-0.5
1,673,007	-		Psyr_1484	0.36	-0.9
1,673,008	+		Psyr_1484	0.37	-1.0
1,673,008	+		Psyr_1484	0.37	-1.4
1,673,008	+		Psyr_1484	0.37	+3.9
1,673,008	+		Psyr_1484	0.37	-0.5
1,673,008	+		Psyr_1484	0.37	-1.7
1,673,008	+		Psyr_1484	0.37	+2.4
1,673,008	+		Psyr_1484	0.37	-0.2
1,673,009	-		Psyr_1484	0.37	+2.9
1,673,009	-		Psyr_1484	0.37	+3.4
1,673,009	-		Psyr_1484	0.37	-0.8
1,673,009	-		Psyr_1484	0.37	-2.3
1,673,075	+		Psyr_1484	0.57	-0.6
1,673,076	-		Psyr_1484	0.58	-0.7
1,673,174	-		Psyr_1484	0.88	-1.9
1,673,174	-		Psyr_1484	0.88	-1.5
1,673,212	+				+2.9
1,673,212	+				-0.8
1,673,212	+				-0.5
1,673,212	+				+2.9
1,673,212	+				+3.9
1,673,212	+				-0.0
1,673,212	+				-0.5
1,673,213	-				+1.6
1,673,213	-				+1.3
1,673,213	-				+2.4
1,673,213	-				-1.4
1,673,213	-				+2.1
1,673,213	-				-1.3
1,673,213	-				-1.1
1,673,216	+				-1.8
1,673,216	+				-1.5
1,673,216	+				-2.1
1,673,216	+				+3.2
1,673,216	+				-1.7
1,673,216	+				-3.5
1,673,216	+				-1.8
1,673,217	-				-0.6
1,673,217	-				+1.1
1,673,217	-				+0.3
1,673,217	-				+2.1
1,673,217	-				-1.4
1,673,217	-				-2.7
1,673,217	-				+3.4
1,673,217	-				+0.1
1,673,217	-				-1.5
1,673,217	-				-1.8
1,673,217	-				-0.7
1,673,217	-				-1.8
1,673,217	-				-1.6
1,673,217	-				-1.4
1,673,217	-				-1.8
1,673,217	-				-0.6
1,673,217	-				-2.1
1,673,217	-				+0.3
1,673,217	-				+0.5
1,673,217	-				+0.1
1,673,225	+				+0.1
1,673,226	-				-4.4
1,673,259	+				+0.4
1,673,259	+				-1.4
1,673,260	-				-1.9
1,673,294	+				+2.6
1,673,294	+				+1.1
1,673,295	-				+0.2
1,673,295	-				+4.2
1,673,323	+				-1.8
1,673,323	+				+1.1
1,673,323	+				+3.2
1,673,323	+				+3.2
1,673,323	+				+2.9
1,673,323	+				-0.9
1,673,323	+				+2.9
1,673,323	+				+4.0
1,673,324	-				-1.4
1,673,324	-				+1.6
1,673,324	-				+3.5
1,673,324	-				-1.4
1,673,324	-				-1.5
1,673,324	-				+1.1
1,673,324	-				-1.4
1,673,375	+		Psyr_1485	0.22	-3.9
1,673,375	+		Psyr_1485	0.22	-4.5
1,673,375	+		Psyr_1485	0.22	-1.0
1,673,397	+		Psyr_1485	0.28	+4.2
1,673,397	+		Psyr_1485	0.28	+1.1
1,673,398	-		Psyr_1485	0.29	-0.7
1,673,398	-		Psyr_1485	0.29	+1.1
1,673,398	-		Psyr_1485	0.29	-0.4
1,673,398	-		Psyr_1485	0.29	-1.9
1,673,398	-		Psyr_1485	0.29	+0.8
1,673,401	+		Psyr_1485	0.30	-0.9
1,673,401	+		Psyr_1485	0.30	-0.2
1,673,401	+		Psyr_1485	0.30	+3.1
1,673,401	+		Psyr_1485	0.30	+2.4
1,673,401	+		Psyr_1485	0.30	+4.4
1,673,401	+		Psyr_1485	0.30	+4.2
1,673,402	-		Psyr_1485	0.30	-1.7
1,673,402	-		Psyr_1485	0.30	+1.6
1,673,402	-		Psyr_1485	0.30	-0.4
1,673,402	-		Psyr_1485	0.30	-3.3
1,673,402	-		Psyr_1485	0.30	-1.2
1,673,477	+		Psyr_1485	0.50	+3.6
1,673,477	+		Psyr_1485	0.50	+2.9
1,673,535	+		Psyr_1485	0.66	-1.0
1,673,566	+		Psyr_1485	0.75	-0.5
1,673,566	+		Psyr_1485	0.75	-1.7
1,673,566	+		Psyr_1485	0.75	-3.7
1,673,566	+		Psyr_1485	0.75	-0.8
1,673,566	+		Psyr_1485	0.75	+0.4
1,673,566	+		Psyr_1485	0.75	+0.3
1,673,567	-		Psyr_1485	0.75	+0.1
1,673,567	-		Psyr_1485	0.75	+0.1
1,673,567	-		Psyr_1485	0.75	-0.9
1,673,567	-		Psyr_1485	0.75	-0.5
1,673,567	-		Psyr_1485	0.75	-0.5
1,673,567	-		Psyr_1485	0.75	+3.6
1,673,615	+		Psyr_1485	0.88	-1.1
1,673,616	-		Psyr_1485	0.88	-0.6
1,673,726	+				-2.4
1,673,726	+				+2.9
1,673,794	+		Psyr_1486	0.10	+3.6
1,673,794	+		Psyr_1486	0.10	+2.9
1,673,795	-		Psyr_1486	0.10	+3.5
1,673,795	-		Psyr_1486	0.10	-3.1
1,673,795	-		Psyr_1486	0.10	-4.4
1,673,795	-		Psyr_1486	0.10	+1.6
1,673,821	+		Psyr_1486	0.12	+1.5
1,673,906	+		Psyr_1486	0.19	+2.1
1,673,906	+		Psyr_1486	0.19	-3.0
1,673,907	-		Psyr_1486	0.19	-6.4
1,673,909	+		Psyr_1486	0.19	-4.7
1,673,909	+		Psyr_1486	0.19	-0.4
1,673,909	+		Psyr_1486	0.19	+2.6
1,673,909	+		Psyr_1486	0.19	-0.7
1,673,909	+		Psyr_1486	0.19	-0.1
1,673,910	-		Psyr_1486	0.19	+2.1
1,674,010	+		Psyr_1486	0.26	-0.6
1,674,010	+		Psyr_1486	0.26	+2.4
1,674,011	-		Psyr_1486	0.26	-4.5
1,674,011	-		Psyr_1486	0.26	+2.9
1,674,011	-		Psyr_1486	0.26	+1.1
1,674,011	-		Psyr_1486	0.26	+2.1
1,674,011	-		Psyr_1486	0.26	+1.6
1,674,011	-		Psyr_1486	0.26	-1.8
1,674,148	+		Psyr_1486	0.37	+2.6
1,674,148	+		Psyr_1486	0.37	-2.7
1,674,148	+		Psyr_1486	0.37	-1.3
1,674,148	+		Psyr_1486	0.37	+1.6
1,674,148	+		Psyr_1486	0.37	+0.1
1,674,148	+		Psyr_1486	0.37	-0.5
1,674,148	+		Psyr_1486	0.37	+3.5
1,674,148	+		Psyr_1486	0.37	-1.3
1,674,148	+		Psyr_1486	0.37	+2.6
1,674,148	+		Psyr_1486	0.37	-2.3
1,674,148	+		Psyr_1486	0.37	-2.8
1,674,148	+		Psyr_1486	0.37	+1.1
1,674,148	+		Psyr_1486	0.37	+2.6
1,674,148	+		Psyr_1486	0.37	-1.2
1,674,148	+		Psyr_1486	0.37	+3.2
1,674,148	+		Psyr_1486	0.37	+2.9
1,674,149	-		Psyr_1486	0.37	+2.1
1,674,149	-		Psyr_1486	0.37	+1.6
1,674,149	-		Psyr_1486	0.37	-0.2
1,674,149	-		Psyr_1486	0.37	-1.8
1,674,149	-		Psyr_1486	0.37	+2.6
1,674,149	-		Psyr_1486	0.37	-0.9
1,674,149	-		Psyr_1486	0.37	-3.5
1,674,152	+		Psyr_1486	0.37	-3.2
1,674,152	+		Psyr_1486	0.37	-2.6
1,674,152	+		Psyr_1486	0.37	-3.5
1,674,152	+		Psyr_1486	0.37	-2.9
1,674,152	+		Psyr_1486	0.37	+1.1
1,674,152	+		Psyr_1486	0.37	-2.5
1,674,153	-		Psyr_1486	0.37	-0.0
1,674,166	+		Psyr_1486	0.38	+0.1
1,674,166	+		Psyr_1486	0.38	+3.8
1,674,166	+		Psyr_1486	0.38	+2.4
1,674,166	+		Psyr_1486	0.38	-1.7
1,674,166	+		Psyr_1486	0.38	-2.9
1,674,166	+		Psyr_1486	0.38	+3.2
1,674,166	+		Psyr_1486	0.38	+4.6
1,674,166	+		Psyr_1486	0.38	+1.6
1,674,166	+		Psyr_1486	0.38	-2.7
1,674,167	-		Psyr_1486	0.38	-0.4
1,674,167	-		Psyr_1486	0.38	+1.4
1,674,167	-		Psyr_1486	0.38	+0.2
1,674,174	-		Psyr_1486	0.39	-3.9
1,674,174	-		Psyr_1486	0.39	+0.1
1,674,176	+		Psyr_1486	0.39	+2.1
1,674,229	-		Psyr_1486	0.43	-0.5
1,674,238	+		Psyr_1486	0.43	-1.3
1,674,238	+		Psyr_1486	0.43	+1.3
1,674,238	+		Psyr_1486	0.43	-2.2
1,674,238	+		Psyr_1486	0.43	-3.0
1,674,238	+		Psyr_1486	0.43	+3.6
1,674,239	-		Psyr_1486	0.43	-0.5
1,674,239	-		Psyr_1486	0.43	+1.9
1,674,239	-		Psyr_1486	0.43	+0.4
1,674,239	-		Psyr_1486	0.43	+1.6
1,674,239	-		Psyr_1486	0.43	+3.5
1,674,291	+		Psyr_1486	0.47	-3.9
1,674,292	-		Psyr_1486	0.47	+3.6
1,674,379	+		Psyr_1486	0.54	-2.1
1,674,379	+		Psyr_1486	0.54	+1.6
1,674,379	+		Psyr_1486	0.54	-4.8
1,674,379	+		Psyr_1486	0.54	-1.5
1,674,379	+		Psyr_1486	0.54	+2.9
1,674,379	+		Psyr_1486	0.54	+2.4
1,674,379	+		Psyr_1486	0.54	+2.4
1,674,379	+		Psyr_1486	0.54	-2.2
1,674,379	+		Psyr_1486	0.54	-1.3
1,674,380	-		Psyr_1486	0.54	-1.9
1,674,380	-		Psyr_1486	0.54	+2.9
1,674,380	-		Psyr_1486	0.54	-1.9
1,674,380	-		Psyr_1486	0.54	+1.3
1,674,380	-		Psyr_1486	0.54	-1.6
1,674,380	-		Psyr_1486	0.54	-0.4
1,674,460	+		Psyr_1486	0.60	-2.3
1,674,467	+		Psyr_1486	0.60	-1.7
1,674,467	+		Psyr_1486	0.60	+2.9
1,674,468	-		Psyr_1486	0.60	-0.9
1,674,468	-		Psyr_1486	0.60	-0.1
1,674,468	-		Psyr_1486	0.60	-2.1
1,674,468	-		Psyr_1486	0.60	+2.6
1,674,468	-		Psyr_1486	0.60	-2.0
1,674,468	-		Psyr_1486	0.60	+4.2
1,674,468	-		Psyr_1486	0.60	-0.7
1,674,468	-		Psyr_1486	0.60	-0.2
1,674,468	-		Psyr_1486	0.60	-2.9
1,674,468	-		Psyr_1486	0.60	-0.6
1,674,483	+		Psyr_1486	0.61	+3.2
1,674,483	+		Psyr_1486	0.61	+3.4
1,674,483	+		Psyr_1486	0.61	+0.8
1,674,483	+		Psyr_1486	0.61	-1.6
1,674,483	+		Psyr_1486	0.61	-1.7
1,674,484	-		Psyr_1486	0.62	+0.6
1,674,484	-		Psyr_1486	0.62	+1.1
1,674,484	-		Psyr_1486	0.62	+0.1
1,674,499	-		Psyr_1486	0.63	-1.0
1,674,731	+		Psyr_1486	0.80	+1.6
1,674,731	+		Psyr_1486	0.80	+3.1
1,674,732	-		Psyr_1486	0.80	+0.1
1,674,786	+		Psyr_1486	0.84	-2.6
1,674,796	+		Psyr_1486	0.85	+0.1
1,674,796	+		Psyr_1486	0.85	+0.9
1,674,796	+		Psyr_1486	0.85	-0.2
1,674,924	+				+3.1
1,674,924	+				+4.1
1,674,925	-				-1.6
1,674,954	+				-1.4
1,674,955	-				-0.6
1,674,955	-				+0.1
1,674,956	+				-1.7
1,674,956	+				-2.0
1,674,957	-				-1.5
1,674,957	-				+0.5
1,674,957	-				-1.7
1,674,957	-				-2.0
1,674,957	-				+2.9
1,674,957	-				+3.1
1,674,957	-				-0.4
1,674,958	+				+2.9
1,674,958	+				-1.9
1,674,958	+				+0.2
1,674,958	+				-3.8
1,674,959	-				-1.3
1,674,959	-				-1.7
1,674,959	-				+4.1
1,674,959	-				+1.1
1,674,959	-				+2.1
1,674,959	-				+2.4
1,674,959	-				+1.1
1,674,959	-				+0.1
1,674,959	-				+0.8
1,674,959	-				-1.9
1,674,959	-				+0.1
1,674,959	-				+2.1
1,674,959	-				+4.1
1,674,959	-				+1.6
1,674,959	-				-0.6
1,674,959	-				-2.2
1,674,966	+				+2.9
1,674,966	+				+0.5
1,674,966	+				-2.1
1,674,966	+				+4.3
1,674,967	-				+2.4
1,674,996	-				+2.1
1,675,020	+				-1.5
1,675,048	+				-2.7
1,675,048	+				+0.1
1,675,049	-				-2.8
1,675,126	-				-0.4
1,675,159	+				+1.1
1,675,159	+				-2.6
1,675,160	-				+2.9
1,675,160	-				+1.3
1,675,160	-				+4.0
1,675,163	+				-1.3
1,675,164	-				+2.1
1,675,164	-				-0.8
1,675,164	-				+3.2
1,675,164	-				+3.6
1,675,164	-				-1.2
1,675,181	-				+0.1
1,675,251	+				+1.1
1,675,251	+				+2.4
1,675,251	+				+3.2
1,675,251	+				-2.4
1,675,251	+				+2.9
1,675,251	+				+0.1
1,675,251	+				+0.1
1,675,251	+				+2.6
1,675,251	+				-0.8
1,675,252	-				-2.2
1,675,252	-				+4.2
1,675,252	-				-1.1
1,675,252	-				-2.9
1,675,252	-				+2.6
1,675,252	-				+0.5
1,675,252	-				+1.4
1,675,252	-				-0.1
1,675,296	-		Psyr_1487	0.14	+3.4
1,675,312	+		Psyr_1487	0.19	+4.2
1,675,312	+		Psyr_1487	0.19	+2.1
1,675,313	-		Psyr_1487	0.19	+4.1
1,675,337	+		Psyr_1487	0.27	-1.6
1,675,338	-		Psyr_1487	0.27	+2.6
1,675,547	-				-0.0
1,675,599	+				-1.1
1,675,599	+				+0.8
1,675,600	-				+2.6
1,675,600	-				-1.6
1,675,600	-				-0.8
1,675,607	-				-1.5
1,675,653	+				-0.9
1,675,654	-				-0.2
1,675,654	-				+0.3
1,675,701	+		Psyr_1488	0.16	-2.7
1,675,798	-		Psyr_1488	0.29	-3.3
1,675,850	+		Psyr_1488	0.36	+0.6
1,675,850	+		Psyr_1488	0.36	-0.3
1,675,850	+		Psyr_1488	0.36	-0.9
1,675,850	+		Psyr_1488	0.36	-1.5
1,675,851	-		Psyr_1488	0.36	-0.4
1,675,851	-		Psyr_1488	0.36	-1.6
1,675,851	-		Psyr_1488	0.36	-4.1
1,675,851	-		Psyr_1488	0.36	-0.7
1,675,894	+		Psyr_1488	0.42	+2.1
1,675,894	+		Psyr_1488	0.42	+0.2
1,675,894	+		Psyr_1488	0.42	-0.5
1,675,895	-		Psyr_1488	0.42	-1.6
1,675,895	-		Psyr_1488	0.42	-0.7
1,675,895	-		Psyr_1488	0.42	+3.5
1,675,895	-		Psyr_1488	0.42	+1.6
1,675,908	+		Psyr_1488	0.44	-0.1
1,675,908	+		Psyr_1488	0.44	+4.1
1,675,909	-		Psyr_1488	0.44	+0.1
1,675,909	-		Psyr_1488	0.44	-0.7
1,675,909	-		Psyr_1488	0.44	-0.9
1,675,909	-		Psyr_1488	0.44	+4.5
1,675,909	-		Psyr_1488	0.44	+0.5
1,675,993	+		Psyr_1488	0.55	+0.2
1,675,993	+		Psyr_1488	0.55	+2.4
1,675,993	+		Psyr_1488	0.55	-0.8
1,675,993	+		Psyr_1488	0.55	-1.0
1,675,993	+		Psyr_1488	0.55	-0.7
1,675,994	-		Psyr_1488	0.55	+0.4
1,675,994	-		Psyr_1488	0.55	-0.7
1,675,994	-		Psyr_1488	0.55	+0.3
1,675,994	-		Psyr_1488	0.55	-1.9
1,675,994	-		Psyr_1488	0.55	-2.3
1,675,994	-		Psyr_1488	0.55	+3.9
1,676,000	+		Psyr_1488	0.56	-0.4
1,676,001	-		Psyr_1488	0.56	-3.6
1,676,001	-		Psyr_1488	0.56	+3.4