Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1484

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,671,902	+		Psyr_1482	0.87	+4.0
1,671,903	-		Psyr_1482	0.87	+3.5
1,671,903	-		Psyr_1482	0.87	-0.7
1,671,941	+		Psyr_1482	0.90	+3.1
1,672,010	+				-1.3
1,672,133	+				-2.0
1,672,133	+				-1.1
1,672,133	+				-0.7
1,672,133	+				-1.6
1,672,133	+				-2.9
1,672,133	+				+0.1
1,672,134	-				+0.4
1,672,134	-				-0.2
1,672,134	-				+3.5
1,672,134	-				-1.4
1,672,134	-				-0.5
1,672,134	-				+1.6
1,672,134	-				+2.1
1,672,134	-				+0.1
1,672,134	-				-2.5
1,672,134	-				+1.1
1,672,160	-				-1.0
1,672,215	+				-1.2
1,672,215	+				-0.4
1,672,219	+				+2.1
1,672,219	+				-3.3
1,672,219	+				+1.1
1,672,220	-				-0.5
1,672,220	-				-0.3
1,672,220	-				-0.9
1,672,307	-				-1.2
1,672,336	+				-0.0
1,672,336	+				-0.2
1,672,337	-				-0.2
1,672,357	+				+2.9
1,672,358	-				+3.4
1,672,358	-				-0.5
1,672,393	+				+0.6
1,672,418	+				+3.9
1,672,419	-				-1.2
1,672,419	-				+0.4
1,672,419	-				-1.0
1,672,419	-				+1.1
1,672,459	+				+0.5
1,672,503	+				+1.9
1,672,628	+		Psyr_1483	0.18	-4.4
1,672,629	-		Psyr_1483	0.18	+2.6
1,672,660	+		Psyr_1483	0.30	-3.5
1,672,661	-		Psyr_1483	0.30	+1.6
1,672,661	-		Psyr_1483	0.30	-1.8
1,672,674	-		Psyr_1483	0.35	-2.9
1,672,701	+		Psyr_1483	0.45	+2.4
1,672,702	-		Psyr_1483	0.46	+0.3
1,672,702	-		Psyr_1483	0.46	+3.8
1,672,773	-		Psyr_1483	0.72	+0.1
1,672,826	+				+0.1
1,672,826	+				-2.0
1,672,826	+				+2.6
1,672,826	+				+3.4
1,672,826	+				+0.1
1,672,826	+				-4.5
1,672,827	-				-1.3
1,672,827	-				-1.2
1,672,827	-				+2.1
1,672,827	-				+2.4
1,672,827	-				-0.1
1,672,832	-				+1.6
1,672,833	+				-2.1
1,672,834	-				-1.2
1,672,842	+				-1.2
1,672,843	-				-0.5
1,672,918	-				-1.6
1,672,938	+		Psyr_1484	0.15	-3.3
1,672,938	+		Psyr_1484	0.15	+0.3
1,672,938	+		Psyr_1484	0.15	+2.1
1,672,938	+		Psyr_1484	0.15	+2.1
1,672,938	+		Psyr_1484	0.15	+0.7
1,672,938	+		Psyr_1484	0.15	+4.2
1,672,938	+		Psyr_1484	0.15	+2.6
1,672,938	+		Psyr_1484	0.15	-0.7
1,672,938	+		Psyr_1484	0.15	+2.1
1,672,938	+		Psyr_1484	0.15	-0.9
1,672,939	-		Psyr_1484	0.15	+0.1
1,672,939	-		Psyr_1484	0.15	+2.6
1,672,939	-		Psyr_1484	0.15	-0.9
1,672,939	-		Psyr_1484	0.15	-0.7
1,672,939	-		Psyr_1484	0.15	-2.4
1,672,939	-		Psyr_1484	0.15	-2.7
1,672,939	-		Psyr_1484	0.15	-1.8
1,672,939	-		Psyr_1484	0.15	+0.1
1,672,939	-		Psyr_1484	0.15	+2.1
1,672,939	-		Psyr_1484	0.15	-0.5
1,673,007	-		Psyr_1484	0.36	-0.9
1,673,008	+		Psyr_1484	0.37	-1.0
1,673,008	+		Psyr_1484	0.37	-1.4
1,673,008	+		Psyr_1484	0.37	+3.9
1,673,008	+		Psyr_1484	0.37	-0.5
1,673,008	+		Psyr_1484	0.37	-1.7
1,673,008	+		Psyr_1484	0.37	+2.4
1,673,008	+		Psyr_1484	0.37	-0.2
1,673,009	-		Psyr_1484	0.37	+2.9
1,673,009	-		Psyr_1484	0.37	+3.4
1,673,009	-		Psyr_1484	0.37	-0.8
1,673,009	-		Psyr_1484	0.37	-2.3
1,673,075	+		Psyr_1484	0.57	-0.6
1,673,076	-		Psyr_1484	0.58	-0.7
1,673,174	-		Psyr_1484	0.88	-1.9
1,673,174	-		Psyr_1484	0.88	-1.5
1,673,212	+				+2.9
1,673,212	+				-0.8
1,673,212	+				-0.5
1,673,212	+				+2.9
1,673,212	+				+3.9
1,673,212	+				-0.0
1,673,212	+				-0.5
1,673,213	-				+1.6
1,673,213	-				+1.3
1,673,213	-				+2.4
1,673,213	-				-1.4
1,673,213	-				+2.1
1,673,213	-				-1.3
1,673,213	-				-1.1
1,673,216	+				-1.8
1,673,216	+				-1.5
1,673,216	+				-2.1
1,673,216	+				+3.2
1,673,216	+				-1.7
1,673,216	+				-3.5
1,673,216	+				-1.8
1,673,217	-				-0.6
1,673,217	-				+1.1
1,673,217	-				+0.3
1,673,217	-				+2.1
1,673,217	-				-1.4
1,673,217	-				-2.7
1,673,217	-				+3.4
1,673,217	-				+0.1
1,673,217	-				-1.5
1,673,217	-				-1.8
1,673,217	-				-0.7
1,673,217	-				-1.8
1,673,217	-				-1.6
1,673,217	-				-1.4
1,673,217	-				-1.8
1,673,217	-				-0.6
1,673,217	-				-2.1
1,673,217	-				+0.3
1,673,217	-				+0.5
1,673,217	-				+0.1
1,673,225	+				+0.1
1,673,226	-				-4.4
1,673,259	+				+0.4
1,673,259	+				-1.4
1,673,260	-				-1.9
1,673,294	+				+2.6
1,673,294	+				+1.1
1,673,295	-				+0.2
1,673,295	-				+4.2
1,673,323	+				-1.8
1,673,323	+				+1.1
1,673,323	+				+3.2
1,673,323	+				+3.2
1,673,323	+				+2.9
1,673,323	+				-0.9
1,673,323	+				+2.9
1,673,323	+				+4.0
1,673,324	-				-1.4
1,673,324	-				+1.6
1,673,324	-				+3.5
1,673,324	-				-1.4
1,673,324	-				-1.5
1,673,324	-				+1.1
1,673,324	-				-1.4
1,673,375	+		Psyr_1485	0.22	-3.9
1,673,375	+		Psyr_1485	0.22	-4.5
1,673,375	+		Psyr_1485	0.22	-1.0
1,673,397	+		Psyr_1485	0.28	+4.2
1,673,397	+		Psyr_1485	0.28	+1.1
1,673,398	-		Psyr_1485	0.29	-0.7
1,673,398	-		Psyr_1485	0.29	+1.1
1,673,398	-		Psyr_1485	0.29	-0.4
1,673,398	-		Psyr_1485	0.29	-1.9
1,673,398	-		Psyr_1485	0.29	+0.8
1,673,401	+		Psyr_1485	0.30	-0.9
1,673,401	+		Psyr_1485	0.30	-0.2
1,673,401	+		Psyr_1485	0.30	+3.1
1,673,401	+		Psyr_1485	0.30	+2.4
1,673,401	+		Psyr_1485	0.30	+4.4
1,673,401	+		Psyr_1485	0.30	+4.2
1,673,402	-		Psyr_1485	0.30	-1.7
1,673,402	-		Psyr_1485	0.30	+1.6
1,673,402	-		Psyr_1485	0.30	-0.4
1,673,402	-		Psyr_1485	0.30	-3.3
1,673,402	-		Psyr_1485	0.30	-1.2
1,673,477	+		Psyr_1485	0.50	+3.6
1,673,477	+		Psyr_1485	0.50	+2.9
1,673,535	+		Psyr_1485	0.66	-1.0
1,673,566	+		Psyr_1485	0.75	-0.5
1,673,566	+		Psyr_1485	0.75	-1.7
1,673,566	+		Psyr_1485	0.75	-3.7
1,673,566	+		Psyr_1485	0.75	-0.8
1,673,566	+		Psyr_1485	0.75	+0.4
1,673,566	+		Psyr_1485	0.75	+0.3
1,673,567	-		Psyr_1485	0.75	+0.1
1,673,567	-		Psyr_1485	0.75	+0.1
1,673,567	-		Psyr_1485	0.75	-0.9
1,673,567	-		Psyr_1485	0.75	-0.5
1,673,567	-		Psyr_1485	0.75	-0.5
1,673,567	-		Psyr_1485	0.75	+3.6
1,673,615	+		Psyr_1485	0.88	-1.1
1,673,616	-		Psyr_1485	0.88	-0.6
1,673,726	+				-2.4
1,673,726	+				+2.9
1,673,794	+		Psyr_1486	0.10	+3.6
1,673,794	+		Psyr_1486	0.10	+2.9
1,673,795	-		Psyr_1486	0.10	+3.5
1,673,795	-		Psyr_1486	0.10	-3.1
1,673,795	-		Psyr_1486	0.10	-4.4
1,673,795	-		Psyr_1486	0.10	+1.6
1,673,821	+		Psyr_1486	0.12	+1.5
1,673,906	+		Psyr_1486	0.19	+2.1
1,673,906	+		Psyr_1486	0.19	-3.0
1,673,907	-		Psyr_1486	0.19	-6.4
1,673,909	+		Psyr_1486	0.19	-4.7
1,673,909	+		Psyr_1486	0.19	-0.4
1,673,909	+		Psyr_1486	0.19	+2.6
1,673,909	+		Psyr_1486	0.19	-0.7
1,673,909	+		Psyr_1486	0.19	-0.1
1,673,910	-		Psyr_1486	0.19	+2.1
1,674,010	+		Psyr_1486	0.26	-0.6
1,674,010	+		Psyr_1486	0.26	+2.4
1,674,011	-		Psyr_1486	0.26	-4.5
1,674,011	-		Psyr_1486	0.26	+2.9
1,674,011	-		Psyr_1486	0.26	+1.1
1,674,011	-		Psyr_1486	0.26	+2.1
1,674,011	-		Psyr_1486	0.26	+1.6
1,674,011	-		Psyr_1486	0.26	-1.8
1,674,148	+		Psyr_1486	0.37	+2.6
1,674,148	+		Psyr_1486	0.37	-2.7
1,674,148	+		Psyr_1486	0.37	-1.3
1,674,148	+		Psyr_1486	0.37	+1.6
1,674,148	+		Psyr_1486	0.37	+0.1
1,674,148	+		Psyr_1486	0.37	-0.5
1,674,148	+		Psyr_1486	0.37	+3.5
1,674,148	+		Psyr_1486	0.37	-1.3
1,674,148	+		Psyr_1486	0.37	+2.6
1,674,148	+		Psyr_1486	0.37	-2.3
1,674,148	+		Psyr_1486	0.37	-2.8
1,674,148	+		Psyr_1486	0.37	+1.1
1,674,148	+		Psyr_1486	0.37	+2.6
1,674,148	+		Psyr_1486	0.37	-1.2
1,674,148	+		Psyr_1486	0.37	+3.2
1,674,148	+		Psyr_1486	0.37	+2.9
1,674,149	-		Psyr_1486	0.37	+2.1
1,674,149	-		Psyr_1486	0.37	+1.6
1,674,149	-		Psyr_1486	0.37	-0.2
1,674,149	-		Psyr_1486	0.37	-1.8
1,674,149	-		Psyr_1486	0.37	+2.6
1,674,149	-		Psyr_1486	0.37	-0.9
1,674,149	-		Psyr_1486	0.37	-3.5
1,674,152	+		Psyr_1486	0.37	-3.2
1,674,152	+		Psyr_1486	0.37	-2.6
1,674,152	+		Psyr_1486	0.37	-3.5
1,674,152	+		Psyr_1486	0.37	-2.9
1,674,152	+		Psyr_1486	0.37	+1.1
1,674,152	+		Psyr_1486	0.37	-2.5
1,674,153	-		Psyr_1486	0.37	-0.0
1,674,166	+		Psyr_1486	0.38	+0.1
1,674,166	+		Psyr_1486	0.38	+3.8
1,674,166	+		Psyr_1486	0.38	+2.4
1,674,166	+		Psyr_1486	0.38	-1.7
1,674,166	+		Psyr_1486	0.38	-2.9
1,674,166	+		Psyr_1486	0.38	+3.2
1,674,166	+		Psyr_1486	0.38	+4.6
1,674,166	+		Psyr_1486	0.38	+1.6
1,674,166	+		Psyr_1486	0.38	-2.7
1,674,167	-		Psyr_1486	0.38	-0.4
1,674,167	-		Psyr_1486	0.38	+1.4
1,674,167	-		Psyr_1486	0.38	+0.2
1,674,174	-		Psyr_1486	0.39	-3.9
1,674,174	-		Psyr_1486	0.39	+0.1
1,674,176	+		Psyr_1486	0.39	+2.1