Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1408

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,593,993	-				+0.4
1,594,087	+				-2.0
1,594,087	+				+2.9
1,594,087	+				+3.6
1,594,614	-		Psyr_1407	0.72	-2.3
1,594,614	-		Psyr_1407	0.72	-2.0
1,594,722	+		Psyr_1407	0.87	-0.6
1,594,723	-		Psyr_1407	0.87	+1.6
1,594,738	+		Psyr_1407	0.89	-0.5
1,594,738	+		Psyr_1407	0.89	+1.1
1,594,738	+		Psyr_1407	0.89	+0.6
1,594,738	+		Psyr_1407	0.89	+1.2
1,594,739	-		Psyr_1407	0.89	+1.1
1,594,739	-		Psyr_1407	0.89	+1.6
1,594,739	-		Psyr_1407	0.89	-0.9
1,594,772	+				+0.1
1,594,772	+				+1.6
1,594,772	+				-1.4
1,594,772	+				+1.1
1,594,773	-				+0.1
1,594,773	-				-2.6
1,594,831	+				+0.4
1,594,832	-				-0.5
1,594,914	+				+0.4
1,594,914	+				+4.5
1,594,914	+				-2.7
1,594,949	+				-1.4
1,594,950	-				-1.7
1,594,958	+				-0.1
1,594,958	+				+3.1
1,594,959	-				+1.6
1,594,959	-				-1.5
1,594,959	-				-1.9
1,594,959	-				-1.9
1,594,996	-				+2.4
1,595,031	+		Psyr_1408	0.15	-3.9
1,595,031	+		Psyr_1408	0.15	+0.1
1,595,032	-		Psyr_1408	0.16	-3.5
1,595,125	-		Psyr_1408	0.33	+3.2
1,595,253	+		Psyr_1408	0.58	+1.6
1,595,254	-		Psyr_1408	0.58	+2.1
1,595,406	-		Psyr_1408	0.87	-2.3
1,595,473	-				+2.1
1,595,473	-				+1.6
1,595,481	+				-0.0
1,595,481	+				+3.5
1,595,481	+				+3.2
1,595,481	+				+2.6
1,595,481	+				-0.8
1,595,481	+				-1.7
1,595,481	+				+2.1
1,595,481	+				+3.8
1,595,481	+				+0.2
1,595,481	+				+1.3
1,595,481	+				+3.8
1,595,481	+				+4.5
1,595,482	-				-1.9
1,595,482	-				+1.6
1,595,482	-				-1.4
1,595,482	-				+2.6
1,595,482	-				-4.0
1,595,482	-				-1.0
1,595,482	-				-0.9
1,595,482	-				+0.1
1,595,482	-				-2.0
1,595,483	+				-1.7
1,595,483	+				-0.9
1,595,483	+				+4.7
1,595,483	+				-1.8
1,595,483	+				-1.2
1,595,483	+				-0.7
1,595,483	+				-0.1
1,595,483	+				+1.1
1,595,483	+				+1.1
1,595,483	+				+1.6
1,595,483	+				-1.6
1,595,483	+				+3.4
1,595,483	+				+1.6
1,595,483	+				+0.3
1,595,483	+				-1.4
1,595,483	+				+1.6
1,595,483	+				-0.7
1,595,483	+				-0.7
1,595,483	+				+0.1
1,595,483	+				+2.9
1,595,483	+				-0.1
1,595,483	+				+2.6
1,595,483	+				-1.7
1,595,483	+				+4.8
1,595,483	+				+3.1
1,595,483	+				-0.5
1,595,483	+				+1.6
1,595,483	+				-0.7
1,595,484	-				+1.6
1,595,484	-				-1.3
1,595,484	-				+3.5
1,595,484	-				+0.5
1,595,484	-				+1.6
1,595,484	-				-3.0
1,595,484	-				+1.6
1,595,484	-				-1.8
1,595,484	-				-0.2
1,595,484	-				-1.5
1,595,484	-				+1.6
1,595,484	-				-3.1
1,595,484	-				+0.2
1,595,484	-				+2.9
1,595,484	-				+0.1
1,595,484	-				+2.9
1,595,493	+				+3.4
1,595,494	-				-1.7
1,595,494	-				+1.6
1,595,494	-				-1.2
1,595,501	-				-0.6
1,595,573	+				+2.4
1,595,741	-		Psyr_1409	0.30	-0.7
1,595,856	-		Psyr_1409	0.49	+0.1
1,596,173	+				-2.7
1,596,191	+				+2.9
1,596,191	+				-3.3
1,596,192	-				+1.6
1,596,262	+				-3.0
1,596,263	-				+0.1
1,596,426	+		Psyr_1410	0.24	+3.5
1,596,427	-		Psyr_1410	0.24	-2.4