Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1373 and Psyr_1374 are separated by 103 nucleotides Psyr_1374 and Psyr_1375 are separated by 540 nucleotides
Psyr_1373: Psyr_1373 - Peptidoglycan-binding LysM:Peptidase M23B, at 1,555,731 to 1,556,597
_1373
Psyr_1374: Psyr_1374 - RNA polymerase, sigma 38 subunit, RpoS, at 1,556,701 to 1,557,708
_1374
Psyr_1375: Psyr_1375 - 4Fe-4S ferredoxin, iron-sulfur binding protein, at 1,558,249 to 1,558,572
_1375
Position (kb) 1556
1557
1558 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1555.909 kb on - strand, within Psyr_1373 at 1556.006 kb on + strand, within Psyr_1373 at 1556.102 kb on + strand, within Psyr_1373 at 1556.170 kb on + strand, within Psyr_1373 at 1556.170 kb on + strand, within Psyr_1373 at 1556.171 kb on - strand, within Psyr_1373 at 1556.182 kb on + strand, within Psyr_1373 at 1556.183 kb on - strand, within Psyr_1373 at 1556.417 kb on + strand, within Psyr_1373 at 1556.421 kb on + strand, within Psyr_1373 at 1556.566 kb on + strand at 1556.567 kb on - strand at 1556.598 kb on + strand at 1556.598 kb on + strand at 1556.599 kb on - strand at 1556.599 kb on - strand at 1556.599 kb on - strand at 1556.621 kb on + strand at 1556.625 kb on - strand at 1556.625 kb on - strand at 1556.694 kb on + strand at 1556.820 kb on + strand, within Psyr_1374 at 1556.820 kb on + strand, within Psyr_1374 at 1556.820 kb on + strand, within Psyr_1374 at 1556.821 kb on - strand, within Psyr_1374 at 1556.821 kb on - strand, within Psyr_1374 at 1556.821 kb on - strand, within Psyr_1374 at 1556.860 kb on + strand, within Psyr_1374 at 1556.860 kb on + strand, within Psyr_1374 at 1556.860 kb on + strand, within Psyr_1374 at 1556.860 kb on + strand, within Psyr_1374 at 1556.860 kb on + strand, within Psyr_1374 at 1556.860 kb on + strand, within Psyr_1374 at 1556.860 kb on + strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.861 kb on - strand, within Psyr_1374 at 1556.869 kb on + strand, within Psyr_1374 at 1556.869 kb on + strand, within Psyr_1374 at 1556.869 kb on + strand, within Psyr_1374 at 1556.870 kb on - strand, within Psyr_1374 at 1556.899 kb on + strand, within Psyr_1374 at 1556.900 kb on - strand, within Psyr_1374 at 1556.900 kb on - strand, within Psyr_1374 at 1556.927 kb on + strand, within Psyr_1374 at 1556.927 kb on + strand, within Psyr_1374 at 1556.927 kb on + strand, within Psyr_1374 at 1556.928 kb on - strand, within Psyr_1374 at 1556.928 kb on - strand, within Psyr_1374 at 1557.024 kb on - strand, within Psyr_1374 at 1557.043 kb on + strand, within Psyr_1374 at 1557.043 kb on + strand, within Psyr_1374 at 1557.044 kb on - strand, within Psyr_1374 at 1557.151 kb on + strand, within Psyr_1374 at 1557.151 kb on + strand, within Psyr_1374 at 1557.152 kb on - strand, within Psyr_1374 at 1557.152 kb on - strand, within Psyr_1374 at 1557.250 kb on + strand, within Psyr_1374 at 1557.623 kb on + strand at 1557.707 kb on - strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.742 kb on + strand at 1557.743 kb on - strand at 1557.743 kb on - strand at 1557.743 kb on - strand at 1557.743 kb on - strand at 1557.743 kb on - strand at 1557.743 kb on - strand at 1557.743 kb on - strand at 1557.743 kb on - strand at 1557.743 kb on - strand at 1557.743 kb on - strand at 1557.752 kb on + strand at 1557.752 kb on + strand at 1557.752 kb on + strand at 1557.752 kb on + strand at 1557.752 kb on + strand at 1557.752 kb on + strand at 1557.752 kb on + strand at 1557.752 kb on + strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.753 kb on - strand at 1557.755 kb on - strand at 1557.766 kb on + strand at 1557.766 kb on + strand at 1557.766 kb on + strand at 1557.766 kb on + strand at 1557.767 kb on - strand at 1557.767 kb on - strand at 1557.767 kb on - strand at 1557.767 kb on - strand at 1557.767 kb on - strand at 1557.767 kb on - strand at 1557.767 kb on - strand at 1557.767 kb on - strand at 1557.767 kb on - strand at 1557.768 kb on + strand at 1557.768 kb on + strand at 1557.768 kb on + strand at 1557.769 kb on - strand at 1557.769 kb on - strand at 1557.769 kb on - strand at 1557.769 kb on - strand at 1557.769 kb on - strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.852 kb on + strand at 1557.852 kb on + strand at 1557.853 kb on - strand at 1557.853 kb on - strand at 1557.853 kb on - strand at 1557.868 kb on + strand at 1557.869 kb on - strand at 1557.880 kb on + strand at 1557.891 kb on + strand at 1557.892 kb on - strand at 1557.892 kb on - strand at 1558.250 kb on + strand at 1558.250 kb on + strand at 1558.251 kb on - strand at 1558.251 kb on - strand at 1558.251 kb on - strand at 1558.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 1,555,909 - Psyr_1373 0.21 -4.1 1,556,006 + Psyr_1373 0.32 -3.3 1,556,102 + Psyr_1373 0.43 +0.0 1,556,170 + Psyr_1373 0.51 -3.3 1,556,170 + Psyr_1373 0.51 +0.0 1,556,171 - Psyr_1373 0.51 +0.0 1,556,182 + Psyr_1373 0.52 +0.0 1,556,183 - Psyr_1373 0.52 -4.0 1,556,417 + Psyr_1373 0.79 +0.0 1,556,421 + Psyr_1373 0.80 -3.9 1,556,566 + -2.3 1,556,567 - +0.0 1,556,598 + -2.2 1,556,598 + +3.2 1,556,599 - +4.1 1,556,599 - +1.0 1,556,599 - +2.6 1,556,621 + +2.0 1,556,625 - -0.2 1,556,625 - -1.0 1,556,694 + -0.8 1,556,820 + Psyr_1374 0.12 +1.6 1,556,820 + Psyr_1374 0.12 -0.4 1,556,820 + Psyr_1374 0.12 +2.0 1,556,821 - Psyr_1374 0.12 +3.0 1,556,821 - Psyr_1374 0.12 -0.9 1,556,821 - Psyr_1374 0.12 +0.2 1,556,860 + Psyr_1374 0.16 +3.0 1,556,860 + Psyr_1374 0.16 +3.0 1,556,860 + Psyr_1374 0.16 -1.2 1,556,860 + Psyr_1374 0.16 +0.7 1,556,860 + Psyr_1374 0.16 +0.7 1,556,860 + Psyr_1374 0.16 -0.1 1,556,860 + Psyr_1374 0.16 +1.0 1,556,861 - Psyr_1374 0.16 +2.4 1,556,861 - Psyr_1374 0.16 +2.4 1,556,861 - Psyr_1374 0.16 +0.2 1,556,861 - Psyr_1374 0.16 -0.2 1,556,861 - Psyr_1374 0.16 +2.8 1,556,861 - Psyr_1374 0.16 +2.8 1,556,861 - Psyr_1374 0.16 -0.5 1,556,861 - Psyr_1374 0.16 +0.3 1,556,861 - Psyr_1374 0.16 +3.2 1,556,861 - Psyr_1374 0.16 +0.4 1,556,861 - Psyr_1374 0.16 -1.8 1,556,861 - Psyr_1374 0.16 -0.5 1,556,861 - Psyr_1374 0.16 +2.6 1,556,869 + Psyr_1374 0.17 -1.3 1,556,869 + Psyr_1374 0.17 -2.1 1,556,869 + Psyr_1374 0.17 +3.0 1,556,870 - Psyr_1374 0.17 +1.6 1,556,899 + Psyr_1374 0.20 -1.5 1,556,900 - Psyr_1374 0.20 -0.5 1,556,900 - Psyr_1374 0.20 -1.7 1,556,927 + Psyr_1374 0.22 +3.2 1,556,927 + Psyr_1374 0.22 +1.0 1,556,927 + Psyr_1374 0.22 +2.6 1,556,928 - Psyr_1374 0.23 +3.9 1,556,928 - Psyr_1374 0.23 +2.4 1,557,024 - Psyr_1374 0.32 +0.5 1,557,043 + Psyr_1374 0.34 +3.4 1,557,043 + Psyr_1374 0.34 +3.2 1,557,044 - Psyr_1374 0.34 +2.4 1,557,151 + Psyr_1374 0.45 +1.6 1,557,151 + Psyr_1374 0.45 -1.1 1,557,152 - Psyr_1374 0.45 +1.0 1,557,152 - Psyr_1374 0.45 -0.3 1,557,250 + Psyr_1374 0.54 +0.0 1,557,623 + +3.2 1,557,707 - +2.0 1,557,742 + +1.6 1,557,742 + +1.1 1,557,742 + +0.4 1,557,742 + -1.1 1,557,742 + +3.5 1,557,742 + +1.0 1,557,742 + +3.5 1,557,742 + +1.6 1,557,742 + -0.5 1,557,742 + -2.4 1,557,742 + +3.0 1,557,743 - -1.9 1,557,743 - +0.2 1,557,743 - +1.6 1,557,743 - -0.6 1,557,743 - +3.2 1,557,743 - +2.6 1,557,743 - +3.8 1,557,743 - +2.6 1,557,743 - +4.4 1,557,743 - +2.8 1,557,752 + -0.2 1,557,752 + -0.4 1,557,752 + +3.6 1,557,752 + -0.7 1,557,752 + +1.6 1,557,752 + +1.0 1,557,752 + +0.2 1,557,752 + -0.7 1,557,753 - -1.1 1,557,753 - +0.3 1,557,753 - -2.3 1,557,753 - +3.6 1,557,753 - +1.0 1,557,753 - +1.6 1,557,753 - -3.0 1,557,753 - +2.4 1,557,753 - +2.4 1,557,753 - -1.0 1,557,753 - +1.0 1,557,753 - -1.5 1,557,753 - -1.8 1,557,753 - +2.5 1,557,753 - +1.1 1,557,755 - -1.9 1,557,766 + -0.5 1,557,766 + +0.0 1,557,766 + +1.4 1,557,766 + -1.2 1,557,767 - +3.0 1,557,767 - -1.6 1,557,767 - +0.1 1,557,767 - +1.6 1,557,767 - +3.5 1,557,767 - +2.0 1,557,767 - +4.4 1,557,767 - +3.5 1,557,767 - -0.7 1,557,768 + +1.6 1,557,768 + +4.5 1,557,768 + -0.2 1,557,769 - -0.7 1,557,769 - +0.4 1,557,769 - -4.0 1,557,769 - +2.6 1,557,769 - -2.7 1,557,836 + -2.9 1,557,836 + -1.0 1,557,836 + +3.2 1,557,836 + -2.4 1,557,836 + +1.0 1,557,836 + +0.8 1,557,836 + -1.5 1,557,836 + +3.6 1,557,836 + +1.2 1,557,836 + -2.0 1,557,837 - -2.5 1,557,837 - +2.0 1,557,837 - +2.0 1,557,837 - -1.4 1,557,837 - -0.4 1,557,837 - +0.0 1,557,852 + -2.0 1,557,852 + +1.6 1,557,853 - -1.8 1,557,853 - +2.8 1,557,853 - +3.4 1,557,868 + +0.5 1,557,869 - -0.8 1,557,880 + +1.3 1,557,891 + -3.3 1,557,892 - +0.4 1,557,892 - -0.9 1,558,250 + +2.4 1,558,250 + +2.6 1,558,251 - +0.5 1,558,251 - +3.5 1,558,251 - +1.0 1,558,689 - -0.4
Or see this region's nucleotide sequence