Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1307

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1305 and Psyr_1306 overlap by 1 nucleotidesPsyr_1306 and Psyr_1307 overlap by 4 nucleotidesPsyr_1307 and Psyr_1308 overlap by 4 nucleotides Psyr_1305: Psyr_1305 - MCP methyltransferase, CheR-type, at 1,480,614 to 1,481,894 _1305 Psyr_1306: Psyr_1306 - CheW-like protein, at 1,481,894 to 1,482,583 _1306 Psyr_1307: Psyr_1307 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 1,482,580 to 1,484,949 _1307 Psyr_1308: Psyr_1308 - Protein-glutamate methylesterase, at 1,484,946 to 1,485,956 _1308 Position (kb) 1482 1483 1484 1485Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1481.748 kb on + strand, within Psyr_1305at 1481.749 kb on - strand, within Psyr_1305at 1481.763 kb on + strand, within Psyr_1305at 1481.764 kb on - strand, within Psyr_1305at 1481.764 kb on - strand, within Psyr_1305at 1481.764 kb on - strand, within Psyr_1305at 1481.876 kb on + strandat 1482.069 kb on - strand, within Psyr_1306at 1482.147 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.271 kb on - strand, within Psyr_1306at 1482.271 kb on - strand, within Psyr_1306at 1482.325 kb on + strand, within Psyr_1306at 1482.338 kb on - strand, within Psyr_1306at 1482.654 kb on - strandat 1482.654 kb on - strandat 1482.685 kb on - strandat 1482.888 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.937 kb on + strand, within Psyr_1307at 1482.938 kb on - strand, within Psyr_1307at 1482.938 kb on - strand, within Psyr_1307at 1482.938 kb on - strand, within Psyr_1307at 1482.938 kb on - strand, within Psyr_1307at 1482.954 kb on + strand, within Psyr_1307at 1482.954 kb on + strand, within Psyr_1307at 1482.954 kb on + strandat 1482.955 kb on - strand, within Psyr_1307at 1482.955 kb on - strand, within Psyr_1307at 1482.955 kb on - strand, within Psyr_1307at 1482.955 kb on - strand, within Psyr_1307at 1483.028 kb on + strand, within Psyr_1307at 1483.515 kb on - strand, within Psyr_1307at 1483.516 kb on + strand, within Psyr_1307at 1483.516 kb on + strand, within Psyr_1307at 1483.516 kb on + strand, within Psyr_1307at 1483.516 kb on + strand, within Psyr_1307at 1483.517 kb on - strand, within Psyr_1307at 1484.013 kb on + strand, within Psyr_1307at 1484.013 kb on + strand, within Psyr_1307at 1484.013 kb on + strand, within Psyr_1307at 1484.014 kb on - strand, within Psyr_1307at 1484.014 kb on - strand, within Psyr_1307at 1484.014 kb on - strand, within Psyr_1307at 1484.014 kb on - strand, within Psyr_1307at 1484.143 kb on + strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.196 kb on + strand, within Psyr_1307at 1484.379 kb on + strand, within Psyr_1307at 1484.380 kb on - strand, within Psyr_1307at 1484.380 kb on - strand, within Psyr_1307at 1484.380 kb on - strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.488 kb on - strand, within Psyr_1307at 1484.488 kb on - strand, within Psyr_1307at 1484.488 kb on - strand, within Psyr_1307at 1484.488 kb on - strand, within Psyr_1307at 1484.654 kb on + strand, within Psyr_1307at 1484.655 kb on - strand, within Psyr_1307at 1484.818 kb on + strandat 1484.818 kb on + strandat 1484.870 kb on - strandat 1484.870 kb on - strandat 1484.872 kb on + strandat 1484.873 kb on - strandat 1484.873 kb on - strandat 1484.930 kb on + strandat 1484.930 kb on + strandat 1484.930 kb on + strandat 1484.930 kb on + strandat 1484.970 kb on - strandat 1485.632 kb on + strand, within Psyr_1308at 1485.664 kb on - strand, within Psyr_1308at 1485.691 kb on - strand, within Psyr_1308at 1485.691 kb on - strand, within Psyr_1308at 1485.732 kb on + strand, within Psyr_1308at 1485.858 kb on + strandat 1485.858 kb on + strandat 1485.858 kb on + strandat 1485.858 kb on + strandat 1485.858 kb on + strandat 1485.859 kb on - strandat 1485.923 kb on - strandat 1485.943 kb on + strandat 1485.943 kb on + strandat 1485.943 kb on + strandat 1485.947 kb on + strandat 1485.947 kb on + strandat 1485.947 kb on + strandat 1485.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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1,481,748 + Psyr_1305 0.89 +3.8
1,481,749 - Psyr_1305 0.89 +2.6
1,481,763 + Psyr_1305 0.90 -2.5
1,481,764 - Psyr_1305 0.90 -0.9
1,481,764 - Psyr_1305 0.90 +0.0
1,481,764 - Psyr_1305 0.90 -1.8
1,481,876 + -0.1
1,482,069 - Psyr_1306 0.25 +2.0
1,482,147 + Psyr_1306 0.37 -1.6
1,482,270 + Psyr_1306 0.54 +1.6
1,482,270 + Psyr_1306 0.54 -1.3
1,482,270 + Psyr_1306 0.54 +3.6
1,482,270 + Psyr_1306 0.54 -1.7
1,482,271 - Psyr_1306 0.55 +0.4
1,482,271 - Psyr_1306 0.55 -0.2
1,482,325 + Psyr_1306 0.62 -2.5
1,482,338 - Psyr_1306 0.64 +3.2
1,482,654 - -0.5
1,482,654 - -1.9
1,482,685 - +3.7
1,482,888 + Psyr_1307 0.13 +2.8
1,482,937 + Psyr_1307 0.15 +0.2
1,482,937 + Psyr_1307 0.15 +2.4
1,482,937 + Psyr_1307 0.15 +0.6
1,482,937 + Psyr_1307 0.15 -1.7
1,482,937 + Psyr_1307 0.15 -2.4
1,482,937 + Psyr_1307 0.15 +3.5
1,482,938 - Psyr_1307 0.15 +2.9
1,482,938 - Psyr_1307 0.15 +2.6
1,482,938 - Psyr_1307 0.15 +0.5
1,482,938 - Psyr_1307 0.15 -1.1
1,482,954 + Psyr_1307 0.16 -0.8
1,482,954 + Psyr_1307 0.16 -2.6
1,482,954 + +1.6
1,482,955 - Psyr_1307 0.16 +1.4
1,482,955 - Psyr_1307 0.16 -1.2
1,482,955 - Psyr_1307 0.16 +0.0
1,482,955 - Psyr_1307 0.16 +3.8
1,483,028 + Psyr_1307 0.19 -1.4
1,483,515 - Psyr_1307 0.39 +0.0
1,483,516 + Psyr_1307 0.39 +2.0
1,483,516 + Psyr_1307 0.39 +0.0
1,483,516 + Psyr_1307 0.39 -1.6
1,483,516 + Psyr_1307 0.39 -0.1
1,483,517 - Psyr_1307 0.40 -0.6
1,484,013 + Psyr_1307 0.60 +3.5
1,484,013 + Psyr_1307 0.60 +1.8
1,484,013 + Psyr_1307 0.60 +0.0
1,484,014 - Psyr_1307 0.61 +3.2
1,484,014 - Psyr_1307 0.61 +0.4
1,484,014 - Psyr_1307 0.61 -2.8
1,484,014 - Psyr_1307 0.61 +0.0
1,484,143 + Psyr_1307 0.66 +0.4
1,484,144 - Psyr_1307 0.66 +0.4
1,484,144 - Psyr_1307 0.66 +4.2
1,484,144 - Psyr_1307 0.66 -2.2
1,484,144 - Psyr_1307 0.66 -1.6
1,484,144 - Psyr_1307 0.66 +2.8
1,484,196 + Psyr_1307 0.68 -0.8
1,484,379 + Psyr_1307 0.76 +1.2
1,484,380 - Psyr_1307 0.76 -1.4
1,484,380 - Psyr_1307 0.76 -0.4
1,484,380 - Psyr_1307 0.76 +2.6
1,484,487 + Psyr_1307 0.80 -1.2
1,484,487 + Psyr_1307 0.80 +3.0
1,484,487 + Psyr_1307 0.80 +1.0
1,484,487 + Psyr_1307 0.80 -1.7
1,484,487 + Psyr_1307 0.80 +0.3
1,484,487 + Psyr_1307 0.80 +0.4
1,484,487 + Psyr_1307 0.80 +0.0
1,484,488 - Psyr_1307 0.81 +3.4
1,484,488 - Psyr_1307 0.81 -1.8
1,484,488 - Psyr_1307 0.81 -3.1
1,484,488 - Psyr_1307 0.81 -2.2
1,484,654 + Psyr_1307 0.88 +2.8
1,484,655 - Psyr_1307 0.88 -1.6
1,484,818 + +0.1
1,484,818 + +0.0
1,484,870 - -0.4
1,484,870 - +3.5
1,484,872 + +3.8
1,484,873 - -0.8
1,484,873 - -0.4
1,484,930 + +2.8
1,484,930 + -1.6
1,484,930 + +2.7
1,484,930 + +0.0
1,484,970 - -0.8
1,485,632 + Psyr_1308 0.68 +1.0
1,485,664 - Psyr_1308 0.71 -0.2
1,485,691 - Psyr_1308 0.74 +2.8
1,485,691 - Psyr_1308 0.74 +1.0
1,485,732 + Psyr_1308 0.78 -1.4
1,485,858 + -0.3
1,485,858 + +3.4
1,485,858 + -2.8
1,485,858 + +1.0
1,485,858 + -1.3
1,485,859 - -1.1
1,485,923 - +3.4
1,485,943 + +2.0
1,485,943 + +3.9
1,485,943 + +3.0
1,485,947 + -0.3
1,485,947 + +1.6
1,485,947 + +2.8
1,485,948 - -2.9

Or see this region's nucleotide sequence