Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1278

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,442,764	-		Psyr_1277	0.36	+3.3
1,443,030	+		Psyr_1277	0.58	-2.5
1,443,031	-		Psyr_1277	0.58	+0.4
1,443,514	+				+0.7
1,443,514	+				+1.0
1,443,515	-				-1.8
1,443,515	-				-0.8
1,443,515	-				+2.6
1,443,515	-				+4.5
1,443,515	-				-3.1
1,443,537	-				+0.3
1,443,537	-				+0.0
1,443,614	-				+3.0
1,443,675	+				-1.3
1,443,675	+				-0.9
1,443,675	+				-0.5
1,443,676	-				-1.0
1,443,765	+		Psyr_1278	0.12	+1.6
1,443,765	+		Psyr_1278	0.12	+0.5
1,443,766	-		Psyr_1278	0.12	-1.2
1,443,766	-		Psyr_1278	0.12	+1.9
1,443,766	-		Psyr_1278	0.12	+3.5
1,443,787	-		Psyr_1278	0.13	-0.7
1,443,922	+		Psyr_1278	0.23	+1.0
1,443,922	+		Psyr_1278	0.23	-0.2
1,443,923	-		Psyr_1278	0.23	+3.5
1,444,067	-		Psyr_1278	0.34	+0.5
1,444,115	-		Psyr_1278	0.37	-2.7
1,444,116	+		Psyr_1278	0.37	+3.7
1,444,116	+		Psyr_1278	0.37	-1.3
1,444,116	+		Psyr_1278	0.37	+0.3
1,444,116	+		Psyr_1278	0.37	-0.2
1,444,117	-		Psyr_1278	0.38	+2.8
1,444,117	-		Psyr_1278	0.38	-1.2
1,444,117	-		Psyr_1278	0.38	+2.8
1,444,117	-		Psyr_1278	0.38	+2.8
1,444,117	-		Psyr_1278	0.38	-0.4
1,444,117	-		Psyr_1278	0.38	+3.0
1,444,117	-		Psyr_1278	0.38	-1.6
1,444,117	-		Psyr_1278	0.38	+2.6
1,444,117	-		Psyr_1278	0.38	-0.9
1,444,129	-		Psyr_1278	0.38	-1.1
1,444,269	+		Psyr_1278	0.49	-2.6
1,444,269	+		Psyr_1278	0.49	+2.7
1,444,269	+		Psyr_1278	0.49	-2.1
1,444,269	+		Psyr_1278	0.49	-1.1
1,444,269	+		Psyr_1278	0.49	-1.0
1,444,270	-		Psyr_1278	0.49	-0.8
1,444,270	-		Psyr_1278	0.49	+4.1
1,444,270	-		Psyr_1278	0.49	+2.3
1,444,270	-		Psyr_1278	0.49	+0.2
1,444,571	+		Psyr_1278	0.71	+4.8
1,444,571	+		Psyr_1278	0.71	+0.5
1,444,572	-		Psyr_1278	0.71	-0.4
1,444,755	-		Psyr_1278	0.84	+0.0
1,444,788	+		Psyr_1278	0.87	+0.9
1,444,788	+		Psyr_1278	0.87	-1.3
1,444,788	+		Psyr_1278	0.87	+3.2
1,444,789	-		Psyr_1278	0.87	+4.2
1,444,789	-		Psyr_1278	0.87	-0.8
1,444,789	-		Psyr_1278	0.87	-1.1
1,444,789	-		Psyr_1278	0.87	+3.7
1,444,789	-		Psyr_1278	0.87	+0.8
1,444,789	-		Psyr_1278	0.87	-1.3
1,444,789	-		Psyr_1278	0.87	+3.2
1,444,789	-		Psyr_1278	0.87	+4.4
1,444,794	+		Psyr_1278	0.87	-2.4
1,444,794	+		Psyr_1278	0.87	-3.0
1,444,795	-		Psyr_1278	0.87	+1.6
1,444,795	-		Psyr_1278	0.87	+1.6
1,444,795	-		Psyr_1278	0.87	+3.8
1,444,795	-		Psyr_1278	0.87	+0.1
1,444,974	+				-0.4
1,444,974	+				+1.3
1,444,974	+				-2.5
1,444,974	+				+2.6
1,444,975	-				+1.6
1,444,975	-				-0.4
1,444,975	-				+1.6
1,444,975	-				-1.1
1,445,046	+				+0.4
1,445,046	+				-1.1
1,445,046	+				-0.3
1,445,047	-				-0.1
1,445,047	-				+2.4
1,445,064	+				+0.8
1,445,064	+				+3.9
1,445,064	+				-1.9
1,445,064	+				-2.2
1,445,064	+				-3.0
1,445,064	+				-1.8
1,445,064	+				-1.1
1,445,065	-				+3.0
1,445,065	-				-1.8
1,445,065	-				-0.3
1,445,156	+				+2.6
1,445,381	-		Psyr_1279	0.25	-0.5
1,445,416	-		Psyr_1279	0.28	+1.3
1,445,502	+		Psyr_1279	0.35	+0.4
1,445,503	-		Psyr_1279	0.35	+2.6
1,445,503	-		Psyr_1279	0.35	+0.5
1,445,512	-		Psyr_1279	0.36	+3.3
1,445,579	-		Psyr_1279	0.41	-0.6
1,445,595	-		Psyr_1279	0.43	+2.3
1,445,595	-		Psyr_1279	0.43	-0.1
1,445,595	-		Psyr_1279	0.43	+2.8
1,445,606	-		Psyr_1279	0.44	+3.5
1,445,606	-		Psyr_1279	0.44	+0.7
1,445,616	+		Psyr_1279	0.44	-1.2
1,445,617	-		Psyr_1279	0.44	-1.2
1,445,781	+		Psyr_1279	0.58	-1.4
1,445,782	-		Psyr_1279	0.58	-1.0
1,445,904	+		Psyr_1279	0.67	-0.9
1,445,905	-		Psyr_1279	0.67	+3.5
1,445,905	-		Psyr_1279	0.67	-1.2