Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1265

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
1,426,727	+		Psyr_1264	0.14	-0.1
1,426,727	+		Psyr_1264	0.14	+1.9
1,426,727	+		Psyr_1264	0.14	-0.1
1,426,727	+		Psyr_1264	0.14	+4.3
1,426,728	-		Psyr_1264	0.14	+3.0
1,426,728	-		Psyr_1264	0.14	-3.8
1,426,728	-		Psyr_1264	0.14	+1.0
1,426,940	+		Psyr_1264	0.58	+3.3
1,426,985	+		Psyr_1264	0.67	-1.1
1,427,013	+		Psyr_1264	0.73	+1.8
1,427,186	-				-1.9
1,427,221	+				-0.1
1,427,298	+				-0.1
1,427,299	-				-1.9
1,427,329	+				-0.1
1,427,329	+				-2.1
1,427,330	-				-2.0
1,427,330	-				+1.7
1,427,330	-				-1.6
1,427,333	+				+2.8
1,427,333	+				+1.8
1,427,333	+				+2.8
1,427,333	+				-1.2
1,427,333	+				+0.3
1,427,334	-				+1.5
1,427,334	-				-0.3
1,427,439	-				+3.2
1,427,439	-				-0.7
1,427,444	+				+2.8
1,427,444	+				-1.0
1,427,444	+				-0.6
1,427,444	+				+3.3
1,427,445	-				-2.2
1,427,445	-				-2.0
1,427,445	-				+2.3
1,427,445	-				-0.6
1,427,447	+				+1.6
1,427,447	+				+0.4
1,427,447	+				+2.3
1,427,448	-				-2.7
1,427,448	-				+1.6
1,427,448	-				-0.6
1,427,448	-				+1.0
1,427,479	+				+3.3
1,427,479	+				-1.6
1,427,479	+				+2.3
1,427,480	-				-0.8
1,427,480	-				-0.2
1,427,480	-				-0.6
1,427,480	-				-1.0
1,427,480	-				-0.0
1,427,480	-				+1.6
1,427,520	+				-1.1
1,427,520	+				+3.0
1,427,520	+				-1.9
1,427,520	+				-0.6
1,427,520	+				-0.8
1,427,544	+				+1.0
1,427,594	+				-0.0
1,427,594	+				+0.3
1,427,594	+				-1.2
1,427,595	-				+1.6
1,427,595	-				-0.7
1,427,595	-				+0.4
1,427,595	-				-0.1
1,427,595	-				+0.2
1,427,595	-				-0.1
1,427,595	-				-1.0
1,427,595	-				-0.3
1,427,651	+				+3.6
1,427,652	-				-1.9
1,427,652	-				+2.6
1,427,666	+				+1.4
1,427,666	+				-1.8
1,427,666	+				+0.8
1,427,667	-				-1.6
1,427,709	+				-0.2
1,427,709	+				+3.0
1,427,709	+				-1.9
1,427,710	-				-0.4
1,427,718	+				+2.6
1,427,719	-				+3.0
1,427,731	+				+3.0
1,427,731	+				-0.0
1,427,732	-				-1.1
1,427,732	-				+3.8
1,427,811	+		Psyr_1265	0.11	-0.5
1,427,811	+		Psyr_1265	0.11	+0.0
1,427,811	+		Psyr_1265	0.11	-1.5
1,427,811	+		Psyr_1265	0.11	-1.0
1,427,811	+		Psyr_1265	0.11	+0.3
1,427,812	-		Psyr_1265	0.11	-1.8
1,427,812	-		Psyr_1265	0.11	+1.0
1,427,812	-		Psyr_1265	0.11	+0.2
1,427,812	-		Psyr_1265	0.11	-1.9
1,427,812	-		Psyr_1265	0.11	+2.0
1,427,818	+		Psyr_1265	0.11	-1.4
1,427,818	+		Psyr_1265	0.11	+1.3
1,427,818	+		Psyr_1265	0.11	-0.2
1,427,819	-		Psyr_1265	0.11	+3.2
1,427,819	-		Psyr_1265	0.11	+0.1
1,427,819	-		Psyr_1265	0.11	+2.0
1,427,819	-		Psyr_1265	0.11	-1.3
1,427,910	+		Psyr_1265	0.16	-0.7
1,427,910	+		Psyr_1265	0.16	-0.0
1,427,910	+		Psyr_1265	0.16	+2.1
1,427,910	+		Psyr_1265	0.16	-0.4
1,427,910	+		Psyr_1265	0.16	-0.9
1,427,910	+		Psyr_1265	0.16	+3.2
1,427,911	-		Psyr_1265	0.16	-1.5
1,427,911	-		Psyr_1265	0.16	-3.6
1,427,911	-		Psyr_1265	0.16	+2.0
1,427,911	-		Psyr_1265	0.16	+2.8
1,427,911	-		Psyr_1265	0.16	+2.0
1,427,911	-		Psyr_1265	0.16	+3.3
1,427,911	-		Psyr_1265	0.16	-0.6
1,427,911	-		Psyr_1265	0.16	-2.0
1,427,911	-		Psyr_1265	0.16	+2.3
1,427,911	-		Psyr_1265	0.16	+2.0
1,427,911	-		Psyr_1265	0.16	+2.3
1,427,911	-		Psyr_1265	0.16	-2.3
1,427,939	+		Psyr_1265	0.17	+0.5
1,428,176	-		Psyr_1265	0.29	-0.8
1,428,273	+		Psyr_1265	0.34	-2.9
1,428,273	+		Psyr_1265	0.34	-0.8
1,428,273	+		Psyr_1265	0.34	+4.6
1,428,273	+		Psyr_1265	0.34	+0.4
1,428,273	+		Psyr_1265	0.34	+0.5
1,428,273	+		Psyr_1265	0.34	-0.6
1,428,274	-		Psyr_1265	0.34	+1.6
1,428,274	-		Psyr_1265	0.34	+1.0
1,428,274	-		Psyr_1265	0.34	+2.0
1,428,274	-		Psyr_1265	0.34	+1.6
1,428,274	-		Psyr_1265	0.34	+3.2
1,428,274	-		Psyr_1265	0.34	-0.0
1,428,274	-		Psyr_1265	0.34	-1.9
1,428,274	-		Psyr_1265	0.34	+2.0
1,428,284	-		Psyr_1265	0.35	-0.0
1,428,387	+		Psyr_1265	0.40	+0.3
1,428,387	+		Psyr_1265	0.40	+1.0
1,428,388	-		Psyr_1265	0.40	+3.0
1,428,388	-		Psyr_1265	0.40	-0.7
1,428,388	-		Psyr_1265	0.40	-1.5
1,428,388	-		Psyr_1265	0.40	+1.1
1,428,388	-		Psyr_1265	0.40	-3.7
1,428,489	+		Psyr_1265	0.45	+4.4
1,428,489	+		Psyr_1265	0.45	-0.7
1,428,489	+		Psyr_1265	0.45	-0.1
1,428,489	+		Psyr_1265	0.45	+3.7
1,428,489	+		Psyr_1265	0.45	-1.2
1,428,490	-		Psyr_1265	0.45	+1.0
1,428,490	-		Psyr_1265	0.45	-1.2
1,428,490	-		Psyr_1265	0.45	-0.0
1,428,490	-		Psyr_1265	0.45	+1.0
1,428,490	-		Psyr_1265	0.45	+2.3
1,428,490	-		Psyr_1265	0.45	+1.0
1,428,490	-		Psyr_1265	0.45	+3.3
1,428,608	+		Psyr_1265	0.51	+1.1
1,428,608	+		Psyr_1265	0.51	+3.0
1,428,609	-		Psyr_1265	0.51	-1.7
1,428,609	-		Psyr_1265	0.51	-2.6
1,428,609	-		Psyr_1265	0.51	-0.7
1,428,609	-		Psyr_1265	0.51	-1.2
1,428,774	+		Psyr_1265	0.60	+2.3
1,428,776	+		Psyr_1265	0.60	-1.3
1,428,796	-		Psyr_1265	0.61	-0.4
1,428,828	+		Psyr_1265	0.62	-1.5
1,428,828	+		Psyr_1265	0.62	-2.1
1,428,828	+		Psyr_1265	0.62	-1.3
1,428,828	+		Psyr_1265	0.62	+1.0
1,428,829	-		Psyr_1265	0.62	-2.7
1,428,829	-		Psyr_1265	0.62	+3.2
1,428,829	-		Psyr_1265	0.62	+3.8
1,428,829	-		Psyr_1265	0.62	-0.0
1,428,836	+		Psyr_1265	0.63	+3.4
1,428,836	+		Psyr_1265	0.63	+1.6
1,428,836	+		Psyr_1265	0.63	-1.2
1,428,836	+		Psyr_1265	0.63	-0.7
1,428,836	+		Psyr_1265	0.63	-0.9
1,428,836	+		Psyr_1265	0.63	+4.0
1,428,837	-		Psyr_1265	0.63	-2.5
1,428,837	-		Psyr_1265	0.63	-1.1
1,428,837	-		Psyr_1265	0.63	+3.8
1,428,837	-		Psyr_1265	0.63	+3.6
1,428,843	+		Psyr_1265	0.63	-0.1
1,428,843	+		Psyr_1265	0.63	-0.4
1,428,843	+		Psyr_1265	0.63	-1.3
1,428,843	+		Psyr_1265	0.63	-0.7
1,428,843	+		Psyr_1265	0.63	-1.1
1,428,843	+		Psyr_1265	0.63	+2.6
1,428,844	-		Psyr_1265	0.63	+3.0
1,428,844	-		Psyr_1265	0.63	-1.5
1,428,844	-		Psyr_1265	0.63	+1.0
1,428,844	-		Psyr_1265	0.63	+2.3
1,428,844	-		Psyr_1265	0.63	-0.9
1,428,878	-		Psyr_1265	0.65	+3.2
1,428,878	-		Psyr_1265	0.65	-2.0
1,428,936	+		Psyr_1265	0.68	+3.0
1,428,936	+		Psyr_1265	0.68	-1.2
1,428,937	-		Psyr_1265	0.68	-0.9
1,429,081	+		Psyr_1265	0.75	-1.2
1,429,081	+		Psyr_1265	0.75	-2.0
1,429,082	-		Psyr_1265	0.75	-0.6
1,429,150	-		Psyr_1265	0.79	+2.6
1,429,183	-		Psyr_1265	0.80	-1.0
1,429,183	-		Psyr_1265	0.80	-1.5
1,429,289	+		Psyr_1265	0.86	-1.2
1,429,332	+		Psyr_1265	0.88	+2.0
1,429,332	+		Psyr_1265	0.88	+4.0
1,429,332	+		Psyr_1265	0.88	-0.3
1,429,332	+		Psyr_1265	0.88	+3.4
1,429,332	+		Psyr_1265	0.88	-2.2
1,429,332	+		Psyr_1265	0.88	-0.8
1,429,332	+		Psyr_1265	0.88	-0.5
1,429,332	+		Psyr_1265	0.88	+2.6
1,429,332	+		Psyr_1265	0.88	+3.2
1,429,332	+		Psyr_1265	0.88	-1.7
1,429,332	+		Psyr_1265	0.88	-3.4
1,429,332	+		Psyr_1265	0.88	-1.6
1,429,332	+		Psyr_1265	0.88	+2.3
1,429,332	+		Psyr_1265	0.88	+3.2
1,429,332	+		Psyr_1265	0.88	-0.0
1,429,333	-		Psyr_1265	0.88	-0.2
1,429,333	-		Psyr_1265	0.88	+4.1
1,429,333	-		Psyr_1265	0.88	-0.9
1,429,333	-		Psyr_1265	0.88	-0.7
1,429,333	-		Psyr_1265	0.88	-0.4
1,429,333	-		Psyr_1265	0.88	-2.3
1,429,333	-		Psyr_1265	0.88	+3.6
1,429,333	-		Psyr_1265	0.88	+3.4
1,429,333	-		Psyr_1265	0.88	-1.1
1,429,333	-		Psyr_1265	0.88	-2.5
1,429,333	-		Psyr_1265	0.88	-0.4
1,429,333	-		Psyr_1265	0.88	+2.0
1,429,333	-		Psyr_1265	0.88	-2.6
1,429,333	-		Psyr_1265	0.88	-1.9
1,429,333	-		Psyr_1265	0.88	-0.4
1,429,333	-		Psyr_1265	0.88	-3.0
1,429,333	-		Psyr_1265	0.88	-1.2
1,429,333	-		Psyr_1265	0.88	+0.6
1,429,333	-		Psyr_1265	0.88	-2.4
1,429,333	-		Psyr_1265	0.88	-0.7
1,429,513	+				-1.1
1,429,514	-				-1.2
1,429,525	+				-1.1
1,429,526	-				-1.8
1,429,526	-				-4.0
1,429,526	-				+1.0
1,429,526	-				-3.5
1,429,526	-				+2.8
1,429,526	-				+2.3
1,429,536	+				-2.2
1,429,536	+				-2.0
1,429,536	+				-0.5
1,429,536	+				-0.0
1,429,537	-				-2.9
1,429,537	-				-1.8
1,429,537	-				+2.0
1,429,659	+				+2.6
1,429,660	-				+2.6
1,429,660	-				+2.6
1,430,075	+		Psyr_1266	0.24	-0.2
1,430,075	+		Psyr_1266	0.24	-1.9
1,430,108	+		Psyr_1266	0.26	-0.6
1,430,108	+		Psyr_1266	0.26	+0.8
1,430,147	+		Psyr_1266	0.29	-1.5
1,430,147	+		Psyr_1266	0.29	-0.4
1,430,153	+		Psyr_1266	0.29	-4.2
1,430,153	+		Psyr_1266	0.29	-2.9
1,430,480	+		Psyr_1266	0.53	-3.1
1,430,480	+		Psyr_1266	0.53	-2.3
1,430,480	+		Psyr_1266	0.53	+4.6
1,430,481	-		Psyr_1266	0.53	+1.0
1,430,481	-		Psyr_1266	0.53	-0.0
1,430,481	-		Psyr_1266	0.53	-3.0