Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1245 and Psyr_1246 are separated by 26 nucleotides Psyr_1246 and Psyr_1247 overlap by 1 nucleotides Psyr_1247 and Psyr_1248 are separated by 3 nucleotides
Psyr_1245: Psyr_1245 - 23S rRNA m(2)A-2503 methyltransferase, at 1,400,404 to 1,401,552
_1245
Psyr_1246: Psyr_1246 - TPR repeat protein:TPR repeat protein, at 1,401,579 to 1,402,337
_1246
Psyr_1247: Psyr_1247 - conserved hypothetical protein, at 1,402,337 to 1,403,341
_1247
Psyr_1248: Psyr_1248 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,403,345 to 1,404,454
_1248
Position (kb)
1402
1403
1404 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 1401.389 kb on - strand, within Psyr_1245 at 1401.390 kb on + strand, within Psyr_1245 at 1401.390 kb on + strand, within Psyr_1245 at 1401.391 kb on - strand, within Psyr_1245 at 1401.391 kb on - strand, within Psyr_1245 at 1401.487 kb on + strand at 1401.487 kb on + strand at 1401.487 kb on + strand at 1401.487 kb on + strand at 1401.488 kb on - strand at 1401.488 kb on - strand at 1401.488 kb on - strand at 1401.488 kb on - strand at 1401.488 kb on - strand at 1401.488 kb on - strand at 1401.489 kb on + strand at 1401.489 kb on + strand at 1401.489 kb on + strand at 1401.489 kb on + strand at 1401.489 kb on + strand at 1401.489 kb on + strand at 1401.489 kb on + strand at 1401.490 kb on - strand at 1401.490 kb on - strand at 1401.490 kb on - strand at 1401.490 kb on - strand at 1401.490 kb on - strand at 1401.490 kb on - strand at 1401.490 kb on - strand at 1401.491 kb on + strand at 1401.491 kb on + strand at 1401.491 kb on + strand at 1401.491 kb on + strand at 1401.491 kb on + strand at 1401.492 kb on - strand at 1401.492 kb on - strand at 1401.492 kb on - strand at 1401.492 kb on - strand at 1401.696 kb on + strand, within Psyr_1246 at 1401.696 kb on + strand, within Psyr_1246 at 1401.696 kb on + strand, within Psyr_1246 at 1401.696 kb on + strand, within Psyr_1246 at 1401.697 kb on - strand, within Psyr_1246 at 1401.951 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.149 kb on + strand, within Psyr_1246 at 1402.167 kb on + strand, within Psyr_1246 at 1402.170 kb on + strand, within Psyr_1246 at 1402.213 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.240 kb on + strand, within Psyr_1246 at 1402.241 kb on - strand, within Psyr_1246 at 1402.241 kb on - strand, within Psyr_1246 at 1402.241 kb on - strand, within Psyr_1246 at 1402.241 kb on - strand, within Psyr_1246 at 1402.241 kb on - strand, within Psyr_1246 at 1402.241 kb on - strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.242 kb on + strand, within Psyr_1246 at 1402.320 kb on + strand at 1402.320 kb on + strand at 1402.362 kb on + strand at 1402.362 kb on + strand at 1402.513 kb on + strand, within Psyr_1247 at 1402.513 kb on + strand, within Psyr_1247 at 1402.529 kb on + strand, within Psyr_1247 at 1402.672 kb on + strand, within Psyr_1247 at 1402.672 kb on + strand, within Psyr_1247 at 1402.672 kb on + strand, within Psyr_1247 at 1403.118 kb on + strand, within Psyr_1247 at 1403.270 kb on + strand at 1403.270 kb on + strand at 1403.270 kb on + strand at 1403.292 kb on + strand at 1403.292 kb on + strand at 1403.292 kb on + strand at 1403.292 kb on + strand at 1403.292 kb on + strand at 1403.331 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 1,401,389 - Psyr_1245 0.86 +0.0 1,401,390 + Psyr_1245 0.86 +0.1 1,401,390 + Psyr_1245 0.86 -2.6 1,401,391 - Psyr_1245 0.86 +1.6 1,401,391 - Psyr_1245 0.86 -1.2 1,401,487 + -0.9 1,401,487 + +2.3 1,401,487 + +0.3 1,401,487 + +0.2 1,401,488 - +2.0 1,401,488 - +2.0 1,401,488 - +2.3 1,401,488 - +3.6 1,401,488 - -2.5 1,401,488 - +0.3 1,401,489 + -1.7 1,401,489 + -0.9 1,401,489 + +2.8 1,401,489 + -2.1 1,401,489 + -0.1 1,401,489 + +3.8 1,401,489 + -0.5 1,401,490 - -2.9 1,401,490 - -2.8 1,401,490 - -1.6 1,401,490 - +2.0 1,401,490 - -2.7 1,401,490 - +0.0 1,401,490 - +1.6 1,401,491 + -2.5 1,401,491 + +0.1 1,401,491 + -0.5 1,401,491 + -2.7 1,401,491 + +0.5 1,401,492 - +0.6 1,401,492 - +1.0 1,401,492 - -2.1 1,401,492 - +3.2 1,401,696 + Psyr_1246 0.15 +1.6 1,401,696 + Psyr_1246 0.15 -0.8 1,401,696 + Psyr_1246 0.15 +1.8 1,401,696 + Psyr_1246 0.15 -1.4 1,401,697 - Psyr_1246 0.16 -0.9 1,401,951 + Psyr_1246 0.49 +0.1 1,402,149 + Psyr_1246 0.75 +0.5 1,402,149 + Psyr_1246 0.75 +3.2 1,402,149 + Psyr_1246 0.75 +2.0 1,402,149 + Psyr_1246 0.75 -0.3 1,402,149 + Psyr_1246 0.75 +0.3 1,402,149 + Psyr_1246 0.75 +2.0 1,402,149 + Psyr_1246 0.75 +4.1 1,402,149 + Psyr_1246 0.75 +0.3 1,402,149 + Psyr_1246 0.75 -2.4 1,402,149 + Psyr_1246 0.75 -0.9 1,402,149 + Psyr_1246 0.75 +3.5 1,402,149 + Psyr_1246 0.75 -0.9 1,402,149 + Psyr_1246 0.75 +0.7 1,402,149 + Psyr_1246 0.75 -0.3 1,402,149 + Psyr_1246 0.75 +4.2 1,402,149 + Psyr_1246 0.75 +4.1 1,402,149 + Psyr_1246 0.75 -0.6 1,402,149 + Psyr_1246 0.75 +0.0 1,402,149 + Psyr_1246 0.75 +1.6 1,402,149 + Psyr_1246 0.75 +3.9 1,402,149 + Psyr_1246 0.75 -1.7 1,402,149 + Psyr_1246 0.75 -2.0 1,402,149 + Psyr_1246 0.75 -1.5 1,402,167 + Psyr_1246 0.77 +3.2 1,402,170 + Psyr_1246 0.78 +4.0 1,402,213 + Psyr_1246 0.84 +4.2 1,402,240 + Psyr_1246 0.87 -0.8 1,402,240 + Psyr_1246 0.87 +4.6 1,402,240 + Psyr_1246 0.87 +2.0 1,402,240 + Psyr_1246 0.87 -0.9 1,402,240 + Psyr_1246 0.87 -0.4 1,402,240 + Psyr_1246 0.87 -2.0 1,402,240 + Psyr_1246 0.87 -0.1 1,402,240 + Psyr_1246 0.87 -1.7 1,402,240 + Psyr_1246 0.87 -1.1 1,402,240 + Psyr_1246 0.87 +3.0 1,402,241 - Psyr_1246 0.87 +0.0 1,402,241 - Psyr_1246 0.87 +3.5 1,402,241 - Psyr_1246 0.87 -3.8 1,402,241 - Psyr_1246 0.87 -4.5 1,402,241 - Psyr_1246 0.87 +1.0 1,402,241 - Psyr_1246 0.87 -1.9 1,402,242 + Psyr_1246 0.87 -0.8 1,402,242 + Psyr_1246 0.87 +0.0 1,402,242 + Psyr_1246 0.87 +2.0 1,402,242 + Psyr_1246 0.87 +3.6 1,402,242 + Psyr_1246 0.87 +3.6 1,402,242 + Psyr_1246 0.87 -1.4 1,402,242 + Psyr_1246 0.87 +1.0 1,402,242 + Psyr_1246 0.87 -0.8 1,402,242 + Psyr_1246 0.87 +1.1 1,402,242 + Psyr_1246 0.87 +3.7 1,402,242 + Psyr_1246 0.87 +4.1 1,402,242 + Psyr_1246 0.87 +0.2 1,402,242 + Psyr_1246 0.87 -1.0 1,402,242 + Psyr_1246 0.87 -1.2 1,402,320 + -0.2 1,402,320 + -1.9 1,402,362 + +1.6 1,402,362 + +0.4 1,402,513 + Psyr_1247 0.18 -4.9 1,402,513 + Psyr_1247 0.18 -0.6 1,402,529 + Psyr_1247 0.19 +2.6 1,402,672 + Psyr_1247 0.33 -2.7 1,402,672 + Psyr_1247 0.33 +1.0 1,402,672 + Psyr_1247 0.33 -2.5 1,403,118 + Psyr_1247 0.78 -2.2 1,403,270 + -2.9 1,403,270 + +4.8 1,403,270 + +1.0 1,403,292 + +2.6 1,403,292 + +2.8 1,403,292 + +1.3 1,403,292 + +3.6 1,403,292 + -0.4 1,403,331 + -1.7
Or see this region's nucleotide sequence